Phyre 2 alignment of P31133 with d1xvxa

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 55 Aligned Residues 301

% Identity 18% Template d1xvxa_

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 1.53

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure														.																												.	.
Query SS confidence														.																												.	.
Query Sequence	A	E	Q	K	T	L	H	I	Y	N	W	S	D	.	Y	I	A	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	.	.	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K
Query Conservation														.																												.	.
Alig confidence														.																												.	.
Template Conservation
Template Sequence	S	N	D	S	G	I	V	V	Y	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	D	A
Template Known Secondary structure				S								S																																						G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	P
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.																				.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.																				.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	V	T	Q	A	Q	V	A	Q	E	Y	R	P	E	H	G	R	W	T	G	I	A	A	R	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	.	.	.	.	L	P	K	S	I	M	D	L	A	K	P	E	W	K	G	R	W	A	A	.	.	S	P	S	G	A	D	F
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.						B		G	G	G	S		S	S	S	S															T	T	T	S		G	G	G	.	.	.	.	S		S	S	G	G	G	G	G	S	G	G	G	T	T	S				.	.		T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.																				.	.
Template SS confidence
											82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	.	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V
Query Conservation																																								.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	A	I	V	S	A	M	L	E	L	K	G	.	.	.	.	.	.	.	.	.	.	.	E	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	I	D	G	G	V	I	Y	H	Y	Y	R	F	V	D	Q	A	K	T	G	E	N	S	G	K	T
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.																			S	S										T	T	S	S	S						T								T	T	T		T	T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.												.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

	263	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure								.																																														.
Query SS confidence								.																																														.
Query Sequence	N	V	S	F	S	I	P	.	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	.	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D
Query Conservation								.																																														.
Alig confidence								.																																														.										.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.
Template Sequence	Q	L	H	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	D	A	A	S	.	.	.	.	.	.	.	.	N	P	K	L	V	P	L	K	D
Template Known Secondary structure							T	T		G	G	G										B	T	T		S	S													S										S	S	S			B			B	T	T				.	.	.	.	.	.	.	.		T	T	S			G	G	G
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Template SS confidence
	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.	.	.	.

	341	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence	V	R	A	K	L	F	T	L	K	V	Q	D	.	P	K	I	D	R	V	R	T	R	A
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence	L	D	A	P	K	V	E	P	S	K	L	N	S	K	K	V	V	E	L	M	T	E	A
Template Known Secondary structure	S							G	G	G													T
Template Predicted Secondary structure
Template SS confidence
	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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