Job Description P31133 Confidence 97.45% Date Thu Jan 5 11:47:16 GMT 2012 Rank 79 Aligned Residues 273 % Identity 15% Template d1pc3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.16

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.														.
Query SS confidence																						.	.														.
Query Sequence		S	V	G	T	L	A	A	E	Q	K	T	L	H	I	Y	N	W	S	D	Y	.	.	I	A	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V
Query Conservation																						.	.														.
Alig confidence																						.	.														.																				.	.	.
Template Conservation																																																									.	.	.
Template Sequence		V	A	T	T	P	A	S	S	P	V	T	L	A	E	T	G	S	T	L	L	Y	P	L	F	N	L	W	G	P	A	F	H	E	R	Y	P	N	V	T	I	T	A	Q	G	T	G	S	G	A	G	I	A	Q	A	A	.	.	.	A	G	T	V	N	I	G	A	S	D	A	Y	L	S	E	G	D	M	A	A	H	K
Template Known Secondary structure					S			S	S										T	T	T															S	T	T							B												.	.	.	T	T	S		S					S	S										S	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	Q	P	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	M	N	I	A	L	A	I	S	A	Q	Q	V	N	Y	N	L	P	.	.	.	.	.	.	G	V	S	E	H	L	K	L	N	G	K	V	L	A	A	M	Y	Q	G	T	I	K	T	W	D	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																		T	.	.	.	.	.	.	T			S															T	S			B	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
																															96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
																							177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	I	A	A	L	N	P	G	V	N	L	P	G	T	A	V	V	P	L	H	R	S	D	G	S	G	D	T	F	L	F	T	Q	Y	L	S	K	Q	D	P	E	G	W	G	K	S	P	G	F	G	T	T	V	D	F	P	A	V	P	G	A	L	G	E	N	G	N	G	G	M	V	T	G	C	A	E	T	P	G
Template Known Secondary structure								S	T	T							B							S	S																	T	T	T	T	T	T	T	T			S	S	S							T	T																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.														.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	V	A	Y	I	G	I	S	F	L	D	Q	A	S	Q	R	G	L	G	E	A	Q	L	G	N	S	S	G	N	F	L	L	P	D	A	Q	S	I	Q	A	A	A	A	G	F	A	S	K	T	P	A	N	Q	A	I	S	M	I	D	G	P	A	P	D	G	Y	P	I	I	N	Y	E	Y	A	I	V	N	N	R	Q
Template Known Secondary structure								G	G	G							T	T									T	T	S						S									T	T	T	T	T				T	T						T	T		S		T	T			S											S	B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		287	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		K	N	K	.	.	.	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		K	D	A	A	T	A	Q	T	L	Q	A	F	L	H	W	A	I	T	D	G	N	K	A	S	F	L	D	Q	V	H	F	Q	P	L	P	P	A	V	V	K	L	S	D	A	L	I	A	T
Template Known Secondary structure		S	S															T	T	G	G	G	S								T		B															T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions