Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 60 Aligned Residues 342 % Identity 15% Template d1j1na_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																							.	.	.																									.	.
Query SS confidence																				.	.	.	.	.																							.	.	.																									.	.
Query Sequence		L	A	A	E	Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	.	.	.	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	.	.	L	E	R	Q	L	T
Query Conservation																				.	.	.	.	.																							.	.	.																									.	.
Alig confidence																				.	.	.	.	.																							.	.	.																									.	.
Template Conservation
Template Sequence		V	T	D	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	K	E	S	F	R	L	T	N	V	K	L	Q	S	V	A	N	K	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	D	L	P	D	V	V	G	G	D	N	L	K	D	K	F	I	Q	Y	G	Q
Template Known Secondary structure		S		S	S											T	T	T					T	T	S											S							S		T	T													T	S	S				S					S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.																.	.	.
Query SS confidence																										.	.	.	.	.																.	.	.
Query Sequence		A	G	V	F	Q	P	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	.	.	.	.	.	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	.	.	.	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P
Query Conservation																										.	.	.	.	.																.	.	.
Alig confidence																										.	.	.	.	.																.	.	.																				.	.
Template Conservation																																																																				.	.
Template Sequence		E	G	A	F	V	P	L	N	K	L	I	D	Q	Y	A	P	H	I	K	A	F	F	K	S	H	P	E	V	E	R	A	I	K	A	P	D	G	N	I	Y	F	I	P	Y	V	P	D	G	V	V	A	R	G	Y	F	I	R	E	D	W	L	K	K	L	N	L	.	.	K	P	P	Q	N	I	D	E	L	Y	T	V
Template Known Secondary structure		T	T	S	B																															T	T	S												S															T	T		.	.					B
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.
		167	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Query Sequence		E	N	L	E	K	L	K	S	C	.	.	.	.	.	.	.	G	V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	V	P	F	I	D	R	H	P	D	E	V	F	R	L	V	N	F	W	G	A	R	S	S	G	S	D	N	Y	M	D	F	Y	I	D	N	G	R	V	K	H	P	W	A	E	T	A	F	R	D	G	M	K	H	V	A	Q	W	Y	K	E	G	L	I
Template Known Secondary structure								S		T	T		S	S	S									S	S	T	T					G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T		B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	.	.	.	.	.	.	.	.	.	.	.	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	E	I	F	T	R	K	A	K	A	R	E	Q	M	F	G	G	N	L	G	G	F	T	H	D	W	F	A	S	T	M	T	F	N	E	G	L	A	K	T	V	P	G	F	K	L	I	P	I	A	P	P	T	N	S	K	G	Q	R	W	E	E	D	S	R	Q	K	V	R	P	D	G	W	A	I	T	V	K	N
Template Known Secondary structure			T	T	T	T	T		G	G	G								T	T														T					T	T	T	T	S	T	T										B		T	T	S				B						S	S		S						B	T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																																							310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	P	V	E	T	I	K	F	F	D	F	Y	F	S	R	P	G	R	D	I	S	N	F	G	V	P	G	V	T	Y	D	I	K	N	G	K	A	V	F	K	D	S	V	L	K	S	P	Q	P	V	N	N	Q	L	Y	D	M	G	A	Q	I	P	I	G	F	W	Q	D	Y	D	Y	E	R	Q	W	T	T	P	E
Template Known Secondary structure		S												T	T	S												B	T	T	T					T	T												S	S								T	T	T		S		S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	A	G	I	D	M	Y	V	K	G	K	Y	V	M	P	G	F	E	G	V	N	M	T	R	E	E	R	A	I	Y	D	K	Y	W	A	D	V	R	T
Template Known Secondary structure													T		B
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions