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Job DescriptionP31133
Confidence100.00%DateThu Jan 5 11:47:16 GMT 2012
Rank20Aligned Residues340
% Identity15%Templated1eu8a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.. .......50... ......60...... ...70.........80.........90.......
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Query Sequence  EQKTLHIYNWSDYIA. . . . PDTVANFEKET. GIKVVYDVFDSNE. . . . . VLEGKLMAGSTGFDLVVPSASFLERQLTAGV
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Template Sequence  EEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGW
Template Known Secondary structure 
SS

SSTT


SSTTT
SSTTTT
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   98.100........ .110.........120.........130.........140.........150.........160.........170....
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Query Sequence  FQPLDKSKLPE. . . WKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKS
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Template Sequence  LEPLDDYVQKDNYDLSVFFQSVINLADKQ. GGKLYALPVYIDAGLLYYRKDLLEKYGYS. KPPETWQELVEMAQKIQSGE
Template Known Secondary structure  B

ST

GGGB
T.TT


TT

.S

SB
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   83......90.........100.........110. ........120.........130.........140 .........150.........160
 
   175.. ..180.........190.........200.. .......210....... ..220.......
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Query Sequence  CGV. . . . . . . . . . . SFLDAPEEVFATVLNYLGKDPNSTK. . . . . . . . ADDYTGPATDLLLKL. . . . . . . . RPNIRYFHSS
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Template Conservation                                 
                       
     
   
              
Template Sequence  RETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEE
Template Known Secondary structure  TTT
TT



SSSTTT

STT
TT
TS

S
GGGGTT

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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   228.230.........240.........250.........260......... 270.........280.........290.........300...
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Query Sequence  QYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIP. . . . KEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPD
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Template Sequence  PVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYS
Template Known Secondary structure  TT

TTSTT
TTTT



B
TTS



BBTT
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TS
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   304.....310.........320.........330.........340.........350.. .......360.........370
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Query Sequence  VVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQD. . PKIDRVRTRAWTKVKSGK
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Template Sequence  VQKGFAMNLGWNPGRVDVYDD. PAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGK
Template Known Secondary structure  T


BSBTTGGGS.
TTT
B




TTTS
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   321........330.........340. ........350.........360.........370.........380........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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