Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 20 Aligned Residues 340 % Identity 15% Template d1eu8a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.90

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.												.														.	.	.	.	.
Query SS confidence																	.	.	.	.												.														.	.	.	.	.
Query Sequence		E	Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	.	.	.	.	.	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V
Query Conservation																	.	.	.	.												.														.	.	.	.	.
Alig confidence																	.	.	.	.												.														.	.	.	.	.
Template Conservation
Template Sequence		E	E	G	K	I	V	F	A	V	G	G	A	P	N	E	I	E	Y	W	K	G	V	I	A	E	F	E	K	K	Y	P	G	V	T	V	E	L	K	R	Q	A	T	D	T	E	Q	R	R	L	D	L	V	N	A	L	R	G	K	S	S	D	P	D	V	F	L	M	D	V	A	W	L	G	Q	F	I	A	S	G	W
Template Known Secondary structure			S	S									S																		S	T	T										S	S													T	T	T		S	S								T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		98	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		F	Q	P	L	D	K	S	K	L	P	E	.	.	.	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S
Query Conservation													.	.	.
Alig confidence													.	.	.																.																														.
Template Conservation																															.																														.
Template Sequence		L	E	P	L	D	D	Y	V	Q	K	D	N	Y	D	L	S	V	F	F	Q	S	V	I	N	L	A	D	K	Q	.	G	G	K	L	Y	A	L	P	V	Y	I	D	A	G	L	L	Y	Y	R	K	D	L	L	E	K	Y	G	Y	S	.	K	P	P	E	T	W	Q	E	L	V	E	M	A	Q	K	I	Q	S	G	E
Template Known Secondary structure		B			S								T			G	G	G	B									T			.	T	T																								T	T			.	S			S	B
Template Predicted Secondary structure																															.																														.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		175	.	.												.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		C	G	V	.	.	.	.	.	.	.	.	.	.	.	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	.	.	.	.	.	.	.	.	R	P	N	I	R	Y	F	H	S	S
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	T	N	P	N	F	W	G	F	V	W	Q	G	K	Q	Y	E	G	L	V	C	D	F	V	E	Y	V	Y	S	N	G	G	S	L	G	E	F	K	D	G	K	W	V	P	T	L	N	K	P	E	N	V	E	A	L	Q	F	M	V	D	L	I	H	K	Y	K	I	S	P	P	N	T	Y	T	E	M	T	E	E
Template Known Secondary structure		T	T	T		T	T									S	S	S													T	T	T			S					T	T						T	T																	T	S			S		G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	.	.	.	.	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D
Query Conservation																																												.	.	.	.
Alig confidence																																												.	.	.	.
Template Conservation
Template Sequence		P	V	R	L	M	F	Q	Q	G	N	A	A	F	E	R	N	W	P	Y	A	W	G	L	H	N	A	D	D	S	P	V	K	G	K	V	G	V	A	P	L	P	H	F	P	G	H	K	S	A	A	T	L	G	G	W	H	I	G	I	S	K	Y	S	D	N	K	A	L	A	W	E	F	V	K	F	V	E	S	Y	S
Template Known Secondary structure									T	T									T							T	S	T	T		T	T	T	T									B		T	T	S					B									B	T	T		S													T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	.	.	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation																																																			.	.
Alig confidence																							.																												.	.
Template Conservation																							.
Template Sequence		V	Q	K	G	F	A	M	N	L	G	W	N	P	G	R	V	D	V	Y	D	D	.	P	A	V	V	S	K	S	P	H	L	K	E	L	R	A	V	F	E	N	A	V	P	R	P	I	V	P	Y	Y	P	Q	L	S	E	I	I	Q	K	Y	V	N	S	A	L	A	G	K
Template Known Secondary structure										T				B	S	B	T	T	G	G	G	S	.								T					T						T		B						T	T																		T	S
Template Predicted Secondary structure																							.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions