Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 37 Aligned Residues 320 % Identity 17% Template c3rpwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure														.	.	.	.																																									.
Query SS confidence														.	.	.	.																																									.
Query Sequence		E	Q	K	T	L	H	I	Y	N	W	S	D	.	.	.	.	Y	I	A	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	.	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D
Query Conservation														.	.	.	.																																									.
Alig confidence														.	.	.	.																																									.							.
Template Conservation																																																																	.
Template Sequence		Q	S	N	V	V	I	X	Q	D	P	G	G	G	Y	G	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	G	I	K	V	V	T	V	Q	E	A	R	S	G	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	.	D	Q	E	T	K	L	L	G	D	C	C	L	A	D	I	D
Template Known Secondary structure				S																			T									S									S													T					S	B					.							T					B
Template Predicted Secondary structure																																																																	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	.	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D
Query Conservation																																																																	.
Alig confidence									.	.	.	.																																								.	.	.	.										.							.	.	.	.	.
Template Conservation									.	.	.	.																																								.	.	.	.																	.	.	.	.	.
Template Sequence		Y	S	K	L	S	E	S	.	.	.	.	A	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	G	D	K	A	.	.	.	.	P	Q	T	W	A	D	F	W	D	V	K	K	F	P	G	R	.	.	.	.	.	R	C	X	P	A
Template Known Secondary structure		G	G	G	S				.	.	.	.							T	S		G	G	G			T	T															T	T	T	S		T	T	S	S	.	.	.	.			S							T	T	T	S		S		.	.	.	.	.					S
Template Predicted Secondary structure									.	.	.	.																																								.	.	.	.																	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	.	.	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K
Query Conservation																																											.	.
Alig confidence																									.																		.	.
Template Conservation																									.
Template Sequence		W	P	R	F	T	F	E	A	A	L	X	A	D	G	V	T	K	D	K	L	Y	P	I	.	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E	A	D	X	C	L	A	Y	T	G	S	X	S	K	L	A	L	E	G	A	P	I	D
Template Known Secondary structure		S	S	T	T									T	T			T	T	S			S		.													G	G	G							S	T	T								T	T	S		S																T		S
Template Predicted Secondary structure																									.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	T	F	N	Q	G	F	V	Y	Y	D	F	F	S	I	P	K	G	A	P	N	Y	D	N	A	L	K	L	L	S	W	R	L	D	P	K	R	A	A	Q	L	T	S	T	F	P	V	A	L	P	S	K	V	V	F	D	A	A	T	D	K	N	I	A	R	Y	W	A	N	N	P	E
Template Known Secondary structure			.	.	.	.	.	.	.	.															B	T	T		T	T												T												S			B		S									S		G	G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		253									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		D	V	R	A	K	L	F	T	.	.	.	.	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		N	V	A	K	A	I	E	W	S	P	D	F	W	G	A	P	S	P	A	G	N	S	T	N	E	E	Y	G	Q	E	K	L	N	A	X
Template Known Secondary structure						S										S	B		T	T	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions