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Job DescriptionP31133
Confidence100.00%DateThu Jan 5 11:47:16 GMT 2012
Rank25Aligned Residues342
% Identity13%Templatec3qufB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.. .......50... ......60.........70... ......80.........90.......
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Query Sequence  GTLAAEQKTLHIYNWSDYIA. PDTVANFEKET. GIKVVYDVFDSNEVLEGKLM. . . AGSTGFDLVVPSASFLERQLTAGV
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Template Sequence  GTAGGGKTKISFYSYFKDNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTXDNRTDVXKSGA
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GGG

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TT
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TTTT
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   32.......40.........50.........60.........70.........80.........90.........100.........110.
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  FQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGV
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Template Sequence  ALDISGE. . DFLDGIDDTNFALFQQ. . DGKTYGXPVSAWVGAFFYNKDILKKAGYD. KFPKTWDEFIEXGKKINSNGSTA
Template Known Secondary structure  B


TT
..GGGTTB
GGGGGGG..TT

B

TT
S.S

SBTTS
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   112...... .120.........130.... .....140.........150.........160... ......170.........180......
 
   178.180.. .......190.........200.. .......210........ .220.........230......
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Query Sequence  SFLDA. . . . . . . PEEVFATVLNYLGKDPNSTK. . . . . . . . ADDYTGPATDLLLKLR. . . . . . PNIRYFHSSQYINDLANG
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Template Sequence  FLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSG
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SSSS
TTT

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GGGTT

TT
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   187..190.........200.........210.........220.........230.........240.........250.........260......
 
   237..240.........250.........260.........270.. .......280.........290.........300.........310..
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Query Sequence  DICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEG. . . . AMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHV
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Template Sequence  NLGVXRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRASDKEKAAAKKFLAYLNSEEGLEAFTSAA
Template Known Secondary structure 

GGGSS




BSS
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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   313......320.........330.........340.........350.........360.........370
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Query Sequence  FYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK
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Template Sequence  GTLSLSSKYNAE. PPAELKDVVDNYFKQNKFYWVNWPKSPTVXSTEGIAQQQKIVQGQ
Template Known Secondary structure  T

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   347..350........ .360.........370.........380.........390.........400...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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