Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 49 Aligned Residues 314 % Identity 17% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure															.	.	.	.																																								.
Query SS confidence															.	.	.	.																																								.
Query Sequence		E	Q	K	T	L	H	I	Y	N	W	S	D	Y	.	.	.	.	I	A	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	.	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D
Query Conservation															.	.	.	.																																								.
Alig confidence															.	.	.	.																																								.
Template Conservation
Template Sequence		A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L	A	Q	V	D
Template Known Secondary structure		T	T																				T																															S	S		S		S															T	T		B
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A
Query Conservation
Alig confidence																		.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		E	K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	.	.	.	.	.	.	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	D	K	I	Q	.	.	.	.	.	.	G	G	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	V	F	F	N	N	L	S
Template Known Secondary structure		T	T	T		G	G	G	G	G	S		G	G	G	T	G	.	.	.	.	.	.	G	G	T	T	S						B									T	T	T	S	T	.	.	.	.	.	.	T			S	S											T	T	T	T	T							G	G
Template Predicted Secondary structure																		.	.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	.	.	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N
Query Conservation																																										.	.
Alig confidence																.	.																									.	.																																			.	.	.	.
Template Conservation																.	.																																																													.	.	.	.
Template Sequence		S	N	V	R	G	A	E	V	L	S	X	F	G	K	.	.	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	V	L	L	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	.	.	.	.
Template Known Secondary structure		G	T	S	S											.	.			S	S	S	T	T													G	G	G							S	T	T									T	S		S																T	T	.	.	.	.
Template Predicted Secondary structure																.	.																																																													.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D
Query Conservation
Alig confidence		.	.																																																												.	.
Template Conservation		.	.																																																												.	.
Template Sequence		.	.	G	X	V	K	W	V	D	P	T	E	G	A	V	S	S	G	P	V	X	A	V	V	K	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q	K	A	F	C	E	A	X	Y	Y	G	A	V	N	R	K	V	.	.	Q	Y	S	E	K	L	K	H	R	L	P	S	I	D	S	V	Q
Template Known Secondary structure		.	.	T	S	S						T	T												B	T	T	S													T	S												T		B		S		T	T		.	.				T	T	T	T	T	T	S			T	T	T		B
Template Predicted Secondary structure		.	.																																																												.	.
Template SS confidence
				253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		L	V	D	T	A	L	L	.	.	.	.	.	I	K	N	X	S	A	L	L	D	L	W	N	K	R	I	A
Template Known Secondary structure									.	.	.	.	.															T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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