Job Description P31133 Confidence 74.81% Date Thu Jan 5 11:47:16 GMT 2012 Rank 92 Aligned Residues 240 % Identity 13% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.			.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure										.	.								.
Query SS confidence										.	.								.
Query Sequence		Q	K	T	L	H	I	Y	N	.	.	W	S	D	Y	I	A	P	.	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S	K
Query Conservation										.	.								.
Alig confidence										.	.								.																				.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	.	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S																		T	T									.											T	T	S	S	S								T	T	T	T						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	P	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	.	.	.	.	.	.	.	.	.	N	V	N	S	I	E	D	L	.	.	.	.	.	.	.	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G																			T	T	S	.	.	.	.	.	.	.	.	.				B	G	G	G		.	.	.	.	.	.	.	S	S	G	G	G	G							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template SS confidence
																	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.										.	.	.	.	.	.	420	.								.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Sequence		G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	.	.	.	.	.	.	.	.	.	.	.	K	L	V	P	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	L	K	Y	L	A	D	.	.	.	.	.
Template Known Secondary structure												T	T		G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.																				T	T										S		T					S						B		.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.												.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	.	.	.	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P
Query Conservation																							.	.	.
Alig confidence		.	.	.																			.	.	.																																						.	.	.
Template Conservation		.	.	.																																																											.	.	.
Template Sequence		.	.	.	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L	D	I	Q	N	G	K	T	P	E	E	A	A	K	.	.	.	N	W	I	K	D	H	Q
Template Known Secondary structure		.	.	.	T	T		T	T												T	T																															T	T									.	.	.						T
Template Predicted Secondary structure		.	.	.																																																											.	.	.
Template SS confidence
					501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.				.	560	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions