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Job DescriptionP31133
Confidence99.52%DateThu Jan 5 11:47:16 GMT 2012
Rank76Aligned Residues219
% Identity13%Templatec3kn3C_
PDB info PDB header:transcriptionChain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
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Query Sequence  PDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAK
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Template Sequence  DVLAPAYKKDTGVDLKWVAVGTGNALKLGE. . NCDVDVVFVHAPKVELEYVEKGFGI. . . . . . . . . . . . . . . . . . . . . . .
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   1920.........30.........40........ .50.........60.........70...
 
   123......130.........140.........150.........160.........170.........180.........190.........200..
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Query Sequence  HDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTK
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Template Sequence  . . . . . . DRTPVXYNDFVIIGNPSFKQKFTGX. SVAEAFKLIEKEQVK. . . FVSRGDKSGTHSKEREVWKEALGKIPEKES
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GGGTTTTTT
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   74.....80.........90........ .100.........110... ......120.........130.........140...
 
   203......210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  ADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAM
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Template Sequence  WY. . . . . . . . . . . . . . . IEAGQGXLATINIAEEQKGLTLTDRGTFIKYESNHKGKPPXVIVLEGDNTLKNFYSIXAVNPK
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   144. ....150.........160.........170.........180.........190.........200........
 
   283......290.........300.........310.
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Query Sequence  PADAKNKDEAYQFLNYLLRPDVVAHISDH
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Template Sequence  RCEKADYKGAKQFIDWIVSEKXQAEIANF
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   209210.........220.........230.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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