Job Description P31133 Confidence 39.01% Date Thu Jan 5 11:47:16 GMT 2012 Rank 98 Aligned Residues 185 % Identity 12% Template c3ix1B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K
Query Conservation
Alig confidence																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	.	.	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	V	V	S
Template Known Secondary structure						T	T									S	S	T	T								T	T	S		.	.	S															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																												.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	.	.	.	.	.	.	.	.	.	Q	D	F	D	S	P	A	D	L	.	.	.	.	.	.	.	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	.	.	.	.	.	.	.	.
Template Known Secondary structure								S			B						T	T	.	.	.	.	.	.	.	.	.	T			S	S	G	G	G	G	.	.	.	.	.	.	.	T	T	S						S		T	T												T	T			G	G	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	V	H	L	M	D	V	G	F	E	L	G	A	S	I	V	S	G	R	A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.							T	T								T	T	S		S				S		B	T	T	T								T	T								G	G	G	T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		289	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	E	A	Y	Q	F	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	V	L	A	A	F	W	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions