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Job DescriptionP31133
Confidence39.01%DateThu Jan 5 11:47:16 GMT 2012
Rank98Aligned Residues185
% Identity12%Templatec3ix1B_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70.........80.........90.........100.........110.........120........
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Query Sequence  FEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNK
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Template Sequence  YFAEEGLDVDIVFPTNPTDPIQLTASGAI. . PLALSYQPDVILARSKD. . . . . . . . . . . . . . . . . . . . . . . . . . . LPVVS
Template Known Secondary structure  TT

SSTTTTS
..S
TT...........................

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   56...60.........70.........80.... .....90.........100. .....
 
   129130.........140.........150.........160.........170.........180.........190.........200........
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Query Sequence  FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTG
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Template Sequence  VASVVRSPLNHVMFLAE. . . . . . . . . QDFDSPADL. . . . . . . VGLTVGYPGIPVNEPILKTMVEAAGGDYEQ. . . . . . . .
Template Known Secondary structure 
S

B
TT.........T

SSGGGG.......TTS
S
TTTT

GGG........
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   107..110.........120... ......130.. .......140.........150.........160..
 
   209210.........220.........230.........240.........250.........260.........270.........280........
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Query Sequence  PATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKN
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Template Sequence  . . . . . . . . . . . VHLMDVGFELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEES
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TT
TTS
S
S
BTTTTT


GGGTT




S
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   163......170.........180.........190.........200.........210.........220.........230.
 
   289290.......
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Query Sequence  KDEAYQFLN
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Template Sequence  GEVLAAFWR
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   232.......240
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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