Phyre 2 alignment of P31133 with c3i3vC

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 45 Aligned Residues 342

% Identity 12% Template c3i3vC_

PDB info PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.												.												.																							.
Query SS confidence																	.	.	.	.	.	.												.												.																							.
Query Sequence	A	E	Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	.	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	.	S	F	L	E	R	Q	L	T	A	G	V
Query Conservation																	.	.	.	.	.	.												.												.																							.
Alig confidence																	.	.	.	.	.	.												.												.																							.
Template Conservation
Template Sequence	S	D	P	D	T	L	V	V	H	T	Q	L	G	T	T	A	P	G	S	P	T	Y	L	A	A	V	D	R	F	R	E	E	N	P	G	V	K	I	K	N	L	V	N	G	D	D	L	A	Q	V	Y	E	T	S	R	L	A	R	K	E	A	D	V	V	X	V	N	L	Y	D	K	T	L	A	W	T	D	V	G	A
Template Known Secondary structure		S	T	T							S		S	S	S	S	T	T																T	T									S	T	T											T	T				S							S	T	T	G	G	G					T	S
Template Predicted Secondary structure
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

	98	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence	F	Q	P	L	D	K	S	K	L	P	E	.	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G
Query Conservation												.
Alig confidence												.																																														.
Template Conservation																																																										.
Template Sequence	T	V	D	V	K	P	Y	L	D	D	W	G	L	R	G	R	V	L	P	A	A	L	A	D	W	T	D	D	E	G	R	V	R	A	F	P	Y	F	A	T	N	W	P	V	A	Y	N	R	A	L	L	D	R	A	G	V	D	.	A	I	P	T	T	G	D	Q	L	I	A	A	A	R	K	L	R	A	K	G	I	A
Template Known Secondary structure	S									G	G	G		T	T	S	B								T	B		T	T	S		B		S	B																				T			.	S				B														T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Query Sequence	V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	.	.	.	.	.	.	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence	P	V	T	V	G	G	N	D	W	T	G	Q	K	L	L	A	Q	I	I	Q	T	F	L	S	Q	D	E	A	R	H	V	Y	S	T	G	D	F	G	V	R	G	A	R	L	G	I	E	Y	F	A	H	L	R	D	A	G	V	F	A	D	K	A	Q	G	L	T	S	D	S	X	T	T	Q	F	N	T	E	E	A	A
Template Known Secondary structure						T	T	S												G	G	G													T		T	T	S																T	T		B		T	T	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.							.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																.
Query SS confidence																																		.	.	.	.	.	.																.
Query Sequence	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	.	.	.	.	.	.	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	.	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V
Query Conservation																																		.	.	.	.	.	.																.
Alig confidence																																		.	.	.	.	.	.																.
Template Conservation
Template Sequence	V	Q	S	A	X	S	S	A	L	A	K	V	P	E	K	V	A	G	H	T	E	V	G	G	W	P	L	A	D	G	A	A	H	D	G	P	T	V	I	R	A	Y	T	L	I	G	F	W	I	S	P	N	G	V	R	K	I	E	Q	V	E	K	F	L	R	F	X	Y	R	P	D	V	V	A	R	F	V	T	E	S
Template Known Secondary structure										T	T	S							T						B		B		T	T		S	S	S	S									S	S											T												T	S
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence	G	R	D	X	A	L	R	T	D	A	V	S	T	G	F	P	L	V	G	A	A	Q	.	R	L	G	S	E	V	S	Q	V	L	L	P	D	V	Y	V	P	P	A	A	A	Q	P	L	I	T	A	T	S	T	S	F	T	R	G
Template Known Secondary structure					S	B			S				T	T	S								.	T			T	T	S						G	G	G	T	S																	S	T	T
Template Predicted Secondary structure																							.
Template SS confidence
	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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