Job Description P31133 Confidence 99.94% Date Thu Jan 5 11:47:16 GMT 2012 Rank 66 Aligned Residues 279 % Identity 12% Template c3cfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																.	.												.																																.
Query SS confidence																.	.												.																																.
Query Sequence		Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	.	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S
Query Conservation																.	.												.																																.
Alig confidence																.	.												.											.																					.
Template Conservation																																								.
Template Sequence		K	I	V	L	K	I	F	H	A	G	S	L	S	V	P	F	E	E	Y	E	K	M	F	E	K	E	H	P	N	V	D	V	E	R	E	P	A	G	.	S	V	A	C	V	R	K	I	I	D	L	G	K	K	A	D	I	L	A	S	A	D	Y	S	L	I	P	Q	M	M	M	P	K	Y	A	D	W	Y	V	M	F
Template Known Secondary structure											G	G	G																T	T										.										T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure																																								.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	P	E
Query Conservation
Alig confidence																																											.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		A	R	N	E	I	V	L	A	Y	T	D	K	S	K	Y	K	D	E	I	N	S	T	N	W	Y	K	I	L	Q	R	P	D	V	K	I	G	F	S	N	P	N	.	.	.	.	.	.	D	D	P	C	G	Y	R	T	Q	M	V	L	Q	L	A	E	L	Y	Y	K	D	P	T	I	Y	D	N	L	V	L	K	H	S
Template Known Secondary structure												T	T	S	T	T	T	T	T			T	T	T					T	T	S	T	T								T	T	.	.	.	.	.	.	T																			T		T	T						T	G	G	G	B
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	.	.	.	.	.	.	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	K	V	E	E	N	N	G	T	Y	L	I	L	V	P	K	E	L	D	V	D	T	N	K	L	F	V	R	S	K	E	T	D	L	L	A	P	L	E	A	G	A	F	D	Y	L	F	I	Y	K	S	V	A	N	Q	H	H	L	K	Y	I	E	L	P	K	E	I	N	L	G	Y	Y	E	Y	A	D	T	Y	K
Template Known Secondary structure		S							T	T								S	S			B		T	T	T					S	S	G	G	G	G						T	T	S	S	S												T	T								T	T	T	S	S			G	G	G					T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		K	V	A	L	K	I	I	A	K	N	K	T	I	N	A	K	P	I	V	Y	G	M	T	V	P	T	N	A	P	H	K	K	E	A	I	E	F	V	K	F	V	L	G	H	P	.	.	.	E	V	L	E	N	N	G	Q	P	A	I
Template Known Secondary structure		T						G	G	G	T																T	T		T	T															T	.	.	.					T	T	T			B
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions