Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 51 Aligned Residues 320 % Identity 13% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.
Predicted Secondary structure																							.												.														.	.	.																					.
Query SS confidence																							.												.														.	.	.																					.
Query Sequence		V	G	T	L	A	A	E	Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	.	.	.	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	.	S	F	L	E	R	Q	L	T	A
Query Conservation																							.												.														.	.	.																					.
Alig confidence																							.												.														.	.	.																					.
Template Conservation
Template Sequence		A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M	D	L	Q	V	K	L	S	N	D
Template Known Secondary structure			T	T			T	T										S																	T	T																							T	T			B		S					S											T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	F	Q	P	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.														.	.																		.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.														.	.																		.	.	.	.
Template Sequence		G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	.	.	.	.	.	.	.	.	.	W	A	N	W	R	N	T	A	Y	A	L	T	F	.	.	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	.	.	.	.	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H
Template Known Secondary structure		T	S							T	T	G	G	G	S		G	.	.	.	.	.	.	.	.	.	G	G			T	T	T					B		.	.									G	G	G		S	S	S			.	.	.	.			S											T					T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.														.	.																		.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.										.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		G	V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	.	.	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N
Query Conservation																																																			.	.
Alig confidence																						.	.	.	.	.	.	.																							.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	.	.	.	.	.	.	.	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A
Template Known Secondary structure		T							T	T	T											.	.	.	.	.	.	.						T	T											T	T					S											T	T	S		S
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		S	R	.	.	.	.	.	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A	N	T	M	Q	A	I
Template Known Secondary structure		T	T	.	.	.	.	.		T	T							S	S													T	T	B	S	S													S											S				B			T	T			S	S	S	B
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		244	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	A	Q	L	R	P	V	P	V	S	P	G	L	M	V	Y	L	D	Q	V	K	R	S	R	L	I	E	R	W	N	E	A	L	R
Template Known Secondary structure			G	G	G						S	T	T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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