Phyre 2 alignment of P31133 with c2zykA

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 28 Aligned Residues 332

% Identity 14% Template c2zykA_

PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	28	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																.	.	.	.	.																									.	.
Query SS confidence																.	.	.	.	.																									.	.
Query Sequence	E	Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	.	.	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P
Query Conservation																.	.	.	.	.																									.	.
Alig confidence																.	.	.	.	.																									.	.
Template Conservation
Template Sequence	K	P	D	K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	K	T	G	I	Q	V	E	V	V	P	V	A	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	P	H	D	R	L	G	E	A	V	T	K	G	L	L	Q	P
Template Known Secondary structure													S	S																												T	T	T									G	G	G	T		S		S						G	G	G	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

	101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	.	.	.	V
Query Conservation																																																																													.	.	.
Alig confidence					.																		.	.																											.	.	.	.	.	.																					.	.	.
Template Conservation					.																		.	.																											.	.	.	.	.	.
Template Sequence	I	Q	V	D	.	N	S	V	K	N	Q	F	D	D	V	A	M	K	A	L	T	Y	.	.	G	G	K	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	G	Q	V	.	.	.	.	.	.	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K	P	D	E	Q	K	Y	G	V
Template Known Secondary structure					.						T	B								T			.	.	T	T																		T	T	T		S	S		.	.	.	.	.	.		S	B													B	T	T	T	T	B
Template Predicted Secondary structure					.																		.	.																											.	.	.	.	.	.
Template SS confidence
	97	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	.	.	.	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence	L	F	E	A	N	N	F	Y	Y	T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S	G	K	V	A	A	V	I	N
Template Known Secondary structure				T	T										T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	P	W	A	I	K	D	Y	Q	A	A	G	I	N	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F	K	E	T	G	E	I	P	P	Q	K	E	L	L	N
Template Known Secondary structure		G	G	G							T	T										B	S	S	S	S															T	T		S														S																	B
Template Predicted Secondary structure
Template SS confidence
	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	.	.	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation																														.	.
Alig confidence	.	.																												.	.
Template Conservation	.	.
Template Sequence	.	.	D	P	M	I	K	N	N	P	V	V	N	G	F	A	K	Q	A	S	K	G	V	P	M	P	S	I	P	E	M	G	V	V	W	E	P	I	N	N	A	H	T	F	V	A	Q	G	K
Template Known Secondary structure	.	.						S												T	T							S	G	G	G																T	T	S
Template Predicted Secondary structure	.	.
Template SS confidence
			328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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