Phyre 2 alignment of P31133 with c2xd3A

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 30 Aligned Residues 328

% Identity 15% Template c2xd3A_

PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose.

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure													.	.																									.	.
Query SS confidence													.	.																									.	.
Query Sequence	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	.	.	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S	K	L
Query Conservation													.	.																									.	.
Alig confidence													.	.																									.	.
Template Conservation
Template Sequence	E	L	T	V	Y	V	D	E	G	Y	K	S	Y	I	E	E	V	A	K	A	Y	E	K	E	A	G	V	K	V	T	L	K	T	G	D	A	L	G	G	L	D	K	L	S	L	D	N	Q	N	G	N	V	P	D	V	M	M	A	P	Y	D	R	V	G	S	L	G	S	D	G	Q	L	S	E	V	K	L	S	D	G
Template Known Secondary structure								G	G	G															S	S																T								S				S															T	T		B							G	G
Template Predicted Secondary structure
Template SS confidence
	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.
Query Sequence	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	.	.	.	.	.	.	.	S	F
Query Conservation																																																																								.	.	.	.	.	.	.
Alig confidence													.	.	.	.																													.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation													.	.	.	.																													.	.	.	.	.	.
Template Sequence	A	K	T	D	D	T	T	K	S	L	V	T	.	.	.	.	A	A	N	G	K	V	Y	G	A	P	A	V	I	E	S	L	V	M	Y	Y	N	K	D	L	V	K	D	A	.	.	.	.	.	.	P	K	T	F	A	D	L	E	N	L	A	K	D	S	K	Y	A	F	A	G	E	D	G	K	T	T	A	F	L	A
Template Known Secondary structure	G											B	.	.	.	.		T	T			B																T	T	T		S	S		.	.	.	.	.	.			B										S	G	G	G	B		T	T	S	T	T		B		S
Template Predicted Secondary structure													.	.	.	.																													.	.	.	.	.	.
Template SS confidence
	122	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.										.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	.	.	.	.	.	.	.	.	.	D	Y	T	G	P	A	T	D	L	L	L	K	L	.	.	.	.	.	.	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W
Query Conservation																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence	D	W	T	N	F	Y	Y	T	Y	G	L	L	A	G	N	G	A	Y	V	F	G	Q	N	G	K	D	A	K	D	I	G	L	A	N	D	G	S	I	V	G	I	N	Y	A	K	S	W	Y	E	K	W	P	K	G	M	Q	D	T	E	G	A	G	N	L	I	Q	T	Q	F	Q	E	G	K	T	A	A	I	I	D	G
Template Known Secondary structure		T	T	S											T	T									T							T	T	S															T	T	S		G	G	G	G		S	S												T	T			S
Template Predicted Secondary structure
Template SS confidence
	192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	.	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence	P	W	K	A	Q	A	F	K	D	A	K	V	N	Y	G	V	A	T	I	P	T	L	P	N	G	K	E	Y	A	A	F	G	G	G	K	A	W	V	I	P	Q	A	V	K	N	L	E	A	S	Q	K	F	V	D	F	L	V	A	T	E	Q	Q	K	V	L	Y	D	K	T	N	E	I	P	A	N	T	E	A	R	S
Template Known Secondary structure	G	G	G							T	T										B		T	T	S															B	T	T		S														S																S	S
Template Predicted Secondary structure
Template SS confidence
	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	.	.	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation																														.	.
Alig confidence	.	.																												.	.
Template Conservation	.	.
Template Sequence	.	.	Y	A	E	G	K	N	D	E	L	T	T	A	V	I	K	Q	F	K	N	T	Q	P	L	P	N	I	S	Q	M	S	A	V	W	D	P	A	K	N	M	L	F	D	A	V	S	G	Q
Template Known Secondary structure	.	.																			S							S	G	G	G	G	G	T													T	T	S
Template Predicted Secondary structure	.	.
Template SS confidence
			352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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