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Job DescriptionP31133
Confidence80.26%DateThu Jan 5 11:47:16 GMT 2012
Rank90Aligned Residues201
% Identity15%Templatec2x26A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40........ .50... ......60.........70.........80.........90.........100...
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Query Sequence  EQKTLHIYNWSDYIAPDTVAN. . . FEKET. GIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDK
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Template Sequence  SPEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGS. . IDLGSTGDIPPIFAQAAGADLVY. .
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TT
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   25....30.........40.........50.........60.........70....... ..80.........90.........100
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  SKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . VGVEPPKPKAEVILVAEN. . . . . . . . . SPIKTVADL. . . . . . . KGHKVAFQKGSSS
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GGGTT.........
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SGGGG.......TTS
TTS
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   101........110........ .120....... ..130.........140
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  EEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVN
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Template Sequence  HNLLLRALRQAGLKFTDIQ. . . . . . . . . . . . . . . . . . PTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDG
Template Known Secondary structure  TT

GGGS..................

TTSSSTTSSS
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   141........150......... 160.........170.........180.........190.........200..
 
   264.....270.........280..... ....290.......
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Query Sequence  VSFSIPKEGAMAFFDVFAMPAD. . AKNKDEAYQFLN
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Template Sequence  . . . . . . . TDLNQTGSFYLAARPYAEKNGAFIQGVLA
Template Known Secondary structure  .......TTS



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   203......210.........220.........230.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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