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Job DescriptionP31133
Confidence100.00%DateThu Jan 5 11:47:16 GMT 2012
Rank40Aligned Residues339
% Identity15%Templatec2uvgA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KTLHIYNWSDYIA. . . . PDTVANFEKET. GIKVVYDVFDSNE. . VLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
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Template Sequence  VNLRMSWWGGNGRHEVTLKALEEFHKEHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYNL
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Query Sequence  KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDA
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Template Sequence  FSVKEQLDLAQFDPKELQQTTVNGKLNGIPISVTARIFYFNDATWAKAGL. . EYPKTWDELLAAGQVFKEKLGDQYYPVV
Template Known Secondary structure  GGGTTTS
GGGS
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Query Sequence  . . . . . . PEEVFATVLNYLGKDPNSTK. . . . . . ADDYTGPATDLLLKLRPNIRY. . . . . . . . . FHSSQYINDLANGDICVA
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Template Conservation                    
                    
      
   
                          
  
Template Sequence  LEHQDTLALIRSYMTQKYNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWNGEWAGT
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Query Sequence  IGWAGDVWQASNRAKEAKNGVNVSFSIPKEG. . . . . AMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYAN
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Template Sequence  YMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQESAMLINFLLNSKEGVELGLERGVPL
Template Known Secondary structure  GGGTS
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Query Sequence  ANKAAT. . PLVSAEVRENPGIYPPADVRAKLFTLKVQD. . . . PKIDRVRTRAWTKVKSGK
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Template Conservation                                                            
 
Template Sequence  SATAVTQLRASGVIKDEDPSVAGLNMALELPHKMTTSPYFDDPQIVSLFGDAIQYIDYGQ
Template Known Secondary structure  STT
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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