Phyre 2 alignment of P31133 with c2i58B

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 44 Aligned Residues 331

% Identity 20% Template c2i58B_

PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.	.	.												.																																			.	.
Query SS confidence													.	.	.												.																																			.	.
Query Sequence	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	.	.	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S
Query Conservation													.	.	.												.																																			.	.
Alig confidence													.	.	.												.																																			.	.
Template Conservation
Template Sequence	T	I	E	Y	F	N	Q	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	K	I	K	V	K	V	V	N	V	P	N	A	G	E	V	L	K	T	R	V	L	A	G	D	V	P	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V	F	E	D	L	S	N	K
Template Known Secondary structure									G	G	G													T	T		T	T									S	S											T	T				S						T	T	S									T	T		B				T	T
Template Predicted Secondary structure
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	.	.
Query Conservation																																																																															.	.
Alig confidence	.	.																	.	.																													.	.																													.	.
Template Conservation	.	.																	.	.																													.	.
Template Sequence	.	.	D	Y	L	K	R	V	K	N	G	Y	A	E	K	Y	A	V	.	.	N	E	K	V	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	.	.	K	V	P	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A	K	G	Q	T	P	F	G	I	A	G	A	D
Template Known Secondary structure	.	.	S	G	G	G	G	B	G	G	G					T		B	.	.	T	T	B							B	B																T		.	.					B													T	T	T				B				T	T
Template Predicted Secondary structure	.	.																	.	.																													.	.
Template SS confidence
			87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

					183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence	.	.	.	.	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	.	.	.	.	.	.	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V
Query Conservation	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence	A	W	T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D	V	I	G	A	F	A	R	G	D	V	L	M
Template Known Secondary structure	G	G	G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	.	.	.	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence	T	P	N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P	E	V	M	Q	K	Y	Y	D	V	D	G	S	P	T	A
Template Known Secondary structure					G	G	G							T			S	S							B		B	S	S	T	T			B					B	S	S					B	S	S		S													T	S															B
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence	I	E	G	V	K	Q	.	.	A	G	E	D	S	P	L	A	G	M	T	E	Y	A	F	T	D	R	H	L	V	W	L	Q	Q	Y	W	T	S	E	A	D	F	H	T	L	T	M	N	Y	V	L	T	G
Template Known Secondary structure	B	T	T				.	.			T	T	S	T	T	T	T	T	T	T	T	T	T	S	T	T					G	G	G	S	S	S
Template Predicted Secondary structure							.	.
Template SS confidence
	321	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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