Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 38 Aligned Residues 339 % Identity 14% Template c2b3fD_ PDB info PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose Resolution 1.56 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.												.											.	.	.	.	.																								.	.
Query SS confidence															.	.	.	.												.											.	.	.	.	.																								.	.
Query Sequence		K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	.	.	.	.	.	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	.	.	S	F	L	E	R	Q	L	T	A	G	V
Query Conservation															.	.	.	.												.											.	.	.	.	.																								.	.
Alig confidence															.	.	.	.												.											.	.	.	.	.																								.	.
Template Conservation
Template Sequence		M	K	L	E	I	F	S	W	W	A	G	D	E	G	P	A	L	E	A	L	I	R	L	Y	K	Q	K	Y	P	G	V	E	V	I	N	A	T	V	T	G	G	A	G	V	N	A	R	A	V	L	K	T	R	M	L	G	G	D	P	P	D	T	F	Q	V	H	A	G	M	E	L	I	G	T	W	V	V	A	N	R
Template Known Secondary structure									S			G	G	G																T	T											G	G	G													T	T				S						T	T					T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		F	Q	P	L	D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	.	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G
Query Conservation																																								.
Alig confidence																																								.																		.	.
Template Conservation																																																										.	.
Template Sequence		M	E	D	L	S	A	L	F	R	Q	E	G	W	L	Q	A	F	P	K	G	L	I	D	L	I	S	Y	K	G	G	I	W	S	V	P	V	N	I	H	R	S	N	V	M	W	Y	L	P	A	K	L	K	G	W	G	V	.	.	N	P	P	R	T	W	D	K	F	L	A	T	C	Q	T	L	K	Q	K	G	L	E
Template Known Secondary structure		B											T		T	T	T	S											T	T									B			S														T		.	.				S	S														T	T		S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	F	L	D	A	P	E	E	V	F	A	T	V	L	N	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	L	A	L	G	E	N	W	T	Q	Q	H	L	W	E	S	V	A	L	A	V	L	G	P	D	D	W	N	N	L	W	N	G	K	L	K	F	T	D	P	K	A	V	R	A	W	E	V	F	G	R	V	L	D	C	A	N	K	D	A	A	G	L	S	W	Q	Q	A	V	D	R	V	V	Q	G	K	A	A	F
Template Known Secondary structure								S																										T	T	S	S		T	T	S															T	T	B		T	T	G	G	G												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	.	.	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N
Query Conservation																																.	.
Alig confidence																																.	.
Template Conservation
Template Sequence		N	I	M	G	D	W	A	A	G	Y	M	T	T	T	L	K	L	K	P	G	T	D	F	A	W	A	P	S	P	G	T	Q	G	V	F	M	M	L	S	D	S	F	G	L	P	K	G	A	K	N	R	Q	N	A	I	N	W	L	R	L	V	G	S	K	E	G	Q	D	T	S	N	P	L	K	G	S	I	A	A	R
Template Known Secondary structure						T									T	T				B	T	T	T	B						T	T		T	T												B	T	T		T	T												T	S												S		B		S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		319	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		K	A	A	T	.	P	L	V	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		L	D	S	D	P	S	K	Y	N	A	Y	G	Q	S	A	M	R	D	W	R	S	N	R	I	V	G	S	L	V	H	G	A	V	A	P	E	S	F	M	S	Q	F	G	T	V	M	E	I	F	L	Q	T	R
Template Known Secondary structure		T	T			G	G	G	S														S						T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions