Job Description P31133 Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012 Rank 15 Aligned Residues 330 % Identity 18% Template c1y4cA_ PDB info PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Resolution 1.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		Q	K	T	L	H	I	Y	N	W	S	D	Y	I	.	.	.	A	P	D	T	V	A	N	F	E	K	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S	K
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		E	G	K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K	V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P	D	K
Template Known Secondary structure											T	T	S																										T	T										T	T	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	P	E	E
Query Conservation
Alig confidence			.																.	.																											.	.	.	.	.	.
Template Conservation			.																.	.																											.	.	.	.	.	.
Template Sequence		A	.	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	.	.	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	.	.	.	.	.	.	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P
Template Known Secondary structure			.			T	T	B								T			.	.	T	T				S														T	T	T		S	S		.	.	.	.	.	.		S	B	G	G	G										T	T	T								S	S	S
Template Predicted Secondary structure			.																.	.																											.	.	.	.	.	.
Template SS confidence
		84		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		186	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure					.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence					.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		V	F	A	.	T	V	L	N	Y	L	G	K	D	P	N	S	T	.	.	.	.	.	.	.	.	.	.	.	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	.	.	.	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q
Query Conservation					.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence					.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N
Template Known Secondary structure											T	T								T	T									T	T	S																T	T	S	S		T	T												T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	.	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V
Query Conservation																																																	.
Alig confidence																																																	.																											.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		I	D	T	S	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S	Y	E	.	.	.	E	E	L
Template Known Secondary structure					T	T										B	B	T	T	B														B	T	T		S												T	T	S	S											S						S	B					.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	.	.	P	K	I	D	R	V	R	T	R	A	W	T	K	V	K	S	G	K
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		A	K	D	P	R	I	A	A	T	M	E	N	A	Q	K	G	E	I	M	P	N	I	P	Q	M	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R
Template Known Secondary structure		T	T														S						S	T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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