Job Description Q46941 Confidence 99.71% Date Thu Jan 5 12:36:00 GMT 2012 Rank 5 Aligned Residues 179 % Identity 10% Template c3sztB_ PDB info PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone Resolution 2.55 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		H	C	Q	I	M	P	E	E	S	P	R	L	Q	Y	C	A	N	S	C	F	C	M	W	P	E	E	.	.	S	S	Y	F	N	R	G	V	V	E	G	I	L	T	K	N	H	N	A	R	L	S	G	Y	I	F	V	D	F	S	V	S	F	L	R	L	F	L	E	K	D	W	I	D	Y	L	A	S	T	D	M	G
Query Conservation																												.	.
Alig confidence																												.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	S	F	G	A	R	A	P	F	P	L	T	A	P	K	Y	H	F	L	S	N	Y	P	G	E	W	K	S	R	Y	I	S	E	D	Y	T	S	I	D	P	I	V	R	H	G	L	L	E	Y	T	P	L	I	W	R	.	.	.	.	.	.	.	.	.	.	.	.	F	F	W	E	E	A	L	H	H	G	I	R
Template Known Secondary structure		B										S	T	T	S									S											T	T	G	G	G	T												S						.	.	.	.	.	.	.	.	.	.	.	.								T	T	T		S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.													.	.	.	.	.	.	.	.	100	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		I	V	L	V	S	D	R	N	M	Q	S	L	A	N	Y	W	R	K	H	N	S	A	.	.	.	.	.	.	.	I	S	A	V	I	Y	N	D	D	G	L	D	V	A	N	E	K	I	R	Q	L	F	I	G	R	Y	L	S	F	T	G	G	N	T	L	T	Q	M	E	F	T	I	M	G	Y	M	V	S	G	Y	N
Query Conservation																								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	G	W	S	I	P	V	R	G	K	Y	G	L	I	S	M	L	S	L	V	R	S	S	S	I	A	A	T	E	I	L	E	K	E	S	F	L	L	W	I	T	S	M	L	Q	A	T	F	G	D	L	L	A	P	R	I	V	P	E	S	N	V	R	L	T	A	R	E	T	E	M	L	K	W	T	A	V	G	K	T
Template Known Secondary structure											G	G	G																																														G	G	G	G																T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	Q	I	A	E	V	L	D	M	D	I	R	S	I	Y	A	Y	K	Q	R	I	E	K	R	M	G	G	K	I	N	E	L	F	I	R	S	H	S	V	Q
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		Y	G	E	I	G	L	I	L	S	I	D	Q	R	T	V	K	F	H	I	V	N	A	M	R	K	L	N	S	S	N	K	A	E	A	T	M	.	K	A	Y	A
Template Known Secondary structure										T																	T	T		S	S							.
Template Predicted Secondary structure																																						.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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