Job Description Q46941 Confidence 99.68% Date Thu Jan 5 12:36:00 GMT 2012 Rank 6 Aligned Residues 171 % Identity 16% Template c3qp5C_ PDB info PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) Resolution 3.25 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		P	E	E	S	P	R	L	Q	Y	C	A	N	S	C	F	C	M	W	P	E	E	.	.	S	S	Y	F	N	R	G	V	V	E	G	I	L	T	K	N	H	N	A	R	L	S	G	Y	I	F	V	D	F	S	V	S	F	L	R	L	F	L	E	K	D	W	I	D	Y	L	A	S	T	D	M	G	I	V	L	V	S
Query Conservation																							.	.
Alig confidence																							.	.																.
Template Conservation																																								.
Template Sequence		L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	D	P	I	L	.	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F
Template Known Secondary structure				T	T	S													S											T	T	T	T	T	T		T	T	T	.	T	S		T	T	S	S									S	S														T	T	T	T	T	T	S
Template Predicted Secondary structure																																								.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		D	R	N	M	Q	S	L	A	N	Y	W	R	K	H	N	S	A	I	S	A	V	I	Y	N	D	D	G	L	D	V	A	N	E	K	I	R	Q	L	F	I	G	.	.	.	.	.	R	Y	L	S	F	T	G	G	N	T	L	T	Q	M	E	F	T	I	M	G	Y	M	V	S	G	Y	N	P	Y	Q	I	A	E	V
Query Conservation																																											.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	S	E	R	N	.	.	.	.	.	.	.	.	.	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P	H	L	H	Q	A	A	I	R	V	A	N	L	L	S	Q	R	E	Y	D	I	F	H	W	M	S	R	G	K	T	N	W	E	I	A	T	I
Template Known Secondary structure						T	T	T	.	.	.	.	.	.	.	.	.	T									S	T	T	G	G	G																																						T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	M	D	I	R	S	I	Y	A	Y	K	Q	R	I	E	K	R	M	G	G	K	I	N	E	L	F	I	R	S	H	S	V
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		L	D	I	S	E	R	T	V	K	F	H	V	A	N	V	I	R	K	L	N	A	N	N	.	.	.	.	.	R	T	H	A	I
Template Known Secondary structure			T																		T		S	S	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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