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Job DescriptionQ46941
Confidence98.93%DateThu Jan 5 12:36:00 GMT 2012
Rank21Aligned Residues145
% Identity16%Templatec3q9sA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60..... ....70.........80.........90.........
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Query Sequence  EESSYFNRGVVEGILTKNHNARLS. . . . . . . . . . . . . . . GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV. . . . . . .
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Template Sequence  EDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRK. NSALPIIVLTARDTVEE
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   10.........20.........30.........40.........50.........60.........70. ........80........
 
   100.........110.........120.........130.........140.........150. ........160.
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Query Sequence  SDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT. . . . . . . . . . . . . . . . . . LTQMEFTIMG
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Template Sequence  KVRLLGLGADDYLIKPFH. . . . . . . . . . PDELLARVKVQLRQRTSESLSXGDLTLDPQKRLVTYKGEELRLSPKEFDILA
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   8990.........100...... ...110.........120.........130.........140.........150........
 
   162.... ...170...... ...180.........190.......
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Query Sequence  YMVSG. . . . YNPYQIAEVL. . . . . DMDIRSIYAYKQRIEKRMGGK
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Template Sequence  LLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHXANLRAKLRDL
Template Known Secondary structure  STT



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   159160.........170.........180.........190.........200...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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