 |
Job Description | Q46941 | Confidence | 76.71% | Date | Thu Jan 5 12:36:00 GMT 2012 |
Rank | 309 | Aligned Residues | 85 |
% Identity | 13% | Template | c3hdvB_ |
PDB info |
PDB header:transcription regulator | Chain: B: PDB Molecule:response regulator; |
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
|
Resolution | 2.09 Å |
|
 |
  |   |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | G | I | L | T | K | N | H | N | A | R | L | S | G | Y | I | F | V | D | F | S | V | S | F | L | R | L | F | L | E | K | D | W | I | D | Y | L | A | S | T | D | M | G | I | V | L | V | S | D | R | N | M | Q | S | L | A | N | Y | W | R | K | H | N | S | A | I | S | A | V | I | Y | N | D | D | G | L | D | V | A | N |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |
|
|   |   |   |   |
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |
Template Sequence |   |
E | E | A | R | L | Y | L | H | Y | Q | K | R | I | G | L | X | I | T | D | L | R | X | Q | P | E | S | G | L | D | L | I | R | T | I | R | A | S | E | R | A | A | L | S | I | I | V | V | S | G | D | T | D | V | E | E | A | V | D | V | X | . |
. |
H | L | G | V | V | D | F | L | L | K | P | V | D | L | G | K | L | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |
| S |
|
| S | S | S |
|  |  |  |  |  |  |  |  |  | T | S | T | T | T | T |
|  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  | . | . |  | T | T |
| S |  |  |  |  | S | S |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | |
|
. | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . |
  |
  |   |
133 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
E | K | I | R | Q | L | F |
Query Conservation |   |
  |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|
Template Sequence |   |
E | L | V | N | K | E | L |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|