Job Description Q46941 Confidence 99.74% Date Thu Jan 5 12:36:00 GMT 2012 Rank 2 Aligned Residues 170 % Identity 10% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure						.	.																																											.
Query SS confidence						.	.																																											.
Query Sequence		W	P	E	E	.	.	S	S	Y	F	N	R	G	V	V	E	G	I	L	T	K	N	H	N	A	R	L	S	G	Y	I	F	V	D	F	S	V	S	F	L	R	L	F	L	E	K	D	W	.	I	D	Y	L	A	S	T	D	M	G	I	V	L	V	S	D	R	N	M	Q	S	L	A	N	Y	W	R	K	H	N	S
Query Conservation						.	.																																											.
Alig confidence						.	.																																											.
Template Conservation
Template Sequence		Y	H	R	Q	W	Q	S	T	Y	F	D	K	K	F	E	A	L	D	P	V	V	K	R	A	R	S	R	K	H	I	F	T	W	S	G	E	H	E	R	P	T	L	S	K	D	E	R	A	F	Y	D	H	A	S	D	F	G	I	R	S	G	I	T	I	P	I	K	T	A	N	G	F	X	S	X	F	T	X	A	S
Template Known Secondary structure		S											T	T	T	T	T	T									T			S						S	S	T	T	T	T	S	S		S											T	T	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	I	S	A	V	I	Y	N	D	D	G	L	D	V	A	N	E	K	I	R	Q	L	F	I	G	R	Y	L	S	F	.	.	T	G	G	N	T	L	T	Q	M	E	F	T	I	M	G	Y	M	V	S	G	Y	N	P	Y	Q	I	A	E	V	L	D	M	D	I	R	S	I	Y	A	Y	K	Q	R	I	E	K	R	M
Query Conservation																																.	.
Alig confidence																																.	.
Template Conservation
Template Sequence		D	K	P	V	I	D	I	D	A	V	A	A	A	A	T	I	G	Q	I	H	A	R	I	S	F	L	R	T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F
Template Known Secondary structure		S	S	S	S																					T	T	T				S		B																	T	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	K	I	N	E	L	F	I	R	S	H	S	V	Q	H
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		D	V	R	S	K	A	H	L	T	A	.	L	A	I	R	R
Template Known Secondary structure		T		S	S							.					T
Template Predicted Secondary structure												.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.		.	.	.	230	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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