Return to main results Retrieve Phyre Job Id

Job DescriptionP39265
Confidence100.00%DateThu Jan 5 11:58:38 GMT 2012
Rank19Aligned Residues283
% Identity20%Templated2fvya1
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution0.92

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50... ......60.........70.........80.........90.........100..
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Query Sequence  AAEYAVVLKTLSNPFWVDMKKGIEDEAKTL. GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVAR
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Template Sequence  DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN. . DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK
Template Known Secondary structure 
S
TTST
TT..
TT
TT
S

SSGGG
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   2.......10.........20.........30......... 40.........50.........60.........70.........
 
   103......110.........120.........130.........140.........150....... ..160.........170...
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Query Sequence  AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGG. . . . . . . . . EVAIIEGKAGNASGEA
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Template Sequence  ARGQNVPVVFFNKEPSRKALDSY. . DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA
Template Known Secondary structure  TTT

SS


T
..TT


GGG
TT
SSS
STT
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   80.........90.........100.. .......110.........120.........130.........140.........150.......
 
   174.....180......... 190.........200.........210..... ....220.........230.........240.........250
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Query Sequence  RRNGATEAFKKASQIK. LVASQPADWDRIKALDVATNVLQRNP. . NIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTD
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Template Sequence  RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. KSSIPVFGVD
Template Known Secondary structure  TT


TT
TSTTGGG

SSTT.
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   158.160.........170.........180.........190.........200.........210.........220...... ...230......
 
   251........260.........270.........280.........290.... .....300.........310.
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Query Sequence  GIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIP. . . . . . . . LDKAPEFKLVDSILVTQ
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Template Sequence  ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE
Template Known Secondary structure 

TSS
B

TTS
TTTTS



BTT



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   237..240.........250.........260.........270.........280.........290.........300.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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