Return to main results Retrieve Phyre Job Id

Job DescriptionP39265
Confidence100.00%DateThu Jan 5 11:58:38 GMT 2012
Rank1Aligned Residues288
% Identity100%Templated1guda_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.7

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA
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Template Sequence  AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA
Template Known Secondary structure 

S
SSST


SSTT
TSS

SSSSTT
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  WKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFK
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Template Sequence  WKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFK
Template Known Secondary structure  TT
SS


TT


S

GGG

STT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ
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Template Sequence  KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ
Template Known Secondary structure  T
TT
TT

TT

SSTT
TTTSS

TS
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   264.....270.........280.........290.........300.........310.
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Query Sequence  MTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ
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Template Sequence  MTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ
Template Known Secondary structure  S


TSS


TTS






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   241........250.........260.........270.........280........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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