Job Description P39265 Confidence 98.62% Date Thu Jan 5 11:58:38 GMT 2012 Rank 80 Aligned Residues 210 % Identity 13% Template c3snrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. Resolution 1.49 Å

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		26	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure													.	.																	.
Query SS confidence													.	.																	.
Query Sequence		E	Y	A	V	V	L	K	T	L	S	N	.	.	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	.	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R
Query Conservation													.	.																	.
Alig confidence													.	.																	.
Template Conservation
Template Sequence		T	V	G	I	S	V	T	T	T	G	P	A	A	A	L	G	I	P	E	R	N	A	L	E	F	V	V	K	E	I	S	G	H	P	I	K	I	I	V	L	D	D	G	G	D	P	T	A	A	T	T	N	A	R	R	F	V	T	E	S	K	A	D	V	I	X	G	S	S	V	T	P	P	S	V	A	I	S	N	V
Template Known Secondary structure										S	S	T	T										G	G	G	G	S		S			T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F
Query Conservation
Alig confidence												.	.	.	.																																			.	.	.											.	.
Template Conservation												.	.	.	.																																			.	.	.											.	.
Template Sequence		A	N	E	A	Q	I	P	H	I	A	.	.	.	.	L	A	P	L	P	I	T	P	E	R	A	K	W	S	V	V	X	P	Q	P	I	P	I	X	G	K	V	L	Y	E	H	X	K	K	.	.	.	N	N	V	K	T	V	G	Y	I	G	.	.	Y	S	D	S	Y	G	D	L	W	F	N	D	L	K	K	Q	G
Template Known Secondary structure						T						.	.	.	.	S	S						T	T	T	T	T	T					S																	.	.	.	T	T									.	.		S	S
Template Predicted Secondary structure												.	.	.	.																																			.	.	.											.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V
Query Conservation
Alig confidence																					.															.
Template Conservation																					.															.
Template Sequence		E	A	X	G	L	K	I	V	G	E	E	R	F	A	R	P	D	T	S	.	V	A	G	Q	A	L	K	L	V	A	A	N	P	D	.	A	I	L	V	G	A	S	G	T	A	A	A	L	P	Q	T	T	L	R	E	R	G	Y	N	G	L	I	Y	Q
Template Known Secondary structure				T	T											T	T		S		.														S	.																					T	T			S
Template Predicted Secondary structure																					.															.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions