Job Description P39265 Confidence 96.25% Date Thu Jan 5 11:58:38 GMT 2012 Rank 100 Aligned Residues 208 % Identity 6% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K
Query Conservation
Alig confidence																										.																																							.
Template Conservation																										.																																							.
Template Sequence		Q	I	G	G	L	F	P	N	Q	Q	S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	.	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	F	G	.	F	Y	E	R	R	T	V	N	M	L	T	S	F	C	G	A
Template Known Secondary structure								S	S	S	S													T		.		S	S	S											T	T																T		S					.				T	T	T
Template Predicted Secondary structure																										.																																							.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A
Query Conservation
Alig confidence															.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.
Template Conservation															.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.
Template Sequence		L	H	V	C	F	I	T	P	S	F	P	V	D	.	.	.	.	.	.	T	S	N	Q	F	V	L	Q	L	R	P	E	L	Q	E	A	L	I	S	I	I	D	H	Y	.	.	.	.	.	.	K	W	Q	T	F	V	Y	I	.	.	.	Y	D	A	D	R	G	L	S	V	L	Q	R	V	L	D	T	A	A	E	K
Template Known Secondary structure			T							S				S	.	.	.	.	.	.	S			T	T					S															.	.	.	.	.	.	T								.	.	.							T	T
Template Predicted Secondary structure															.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T	D	G	I
Query Conservation
Alig confidence			.																														.
Template Conservation			.																														.
Template Sequence		N	.	W	Q	V	T	A	V	N	I	L	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	.	L	V	V	V	D	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E	K	N	G	I	G	Y	H	Y	I	L	A	N	L
Template Known Secondary structure		T	.								T	T	T																S	S	S		.																					T	T		S	S	T	T								S
Template Predicted Secondary structure			.																														.
Template SS confidence
		151		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions