Job Description P39265 Confidence 99.81% Date Thu Jan 5 11:58:38 GMT 2012 Rank 71 Aligned Residues 238 % Identity 11% Template c3s99A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		E	Y	A	V	V	L	K	T	L	.	.	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		K	V	G	F	I	Y	I	G	P	P	G	D	F	G	W	T	Y	Q	H	D	Q	A	R	K	E	L	V	E	A	L	G	D	K	V	E	T	T	F	L	E	N	V	A	E	G	A	D	A	E	R	S	I	K	R	I	A	R	A	G	N	K	L	I	F	T	T	S	F	G	Y	M	D	P	T	V	K	V	A	K	K
Template Known Secondary structure								S	S		G	G	G	S	S																	T	T	T								S			T	T													T	T		S						S	G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K
Query Conservation
Alig confidence			.															.	.	.	.	.	.	.	.																													.	.
Template Conservation			.															.	.	.	.	.	.	.	.																													.	.
Template Sequence		F	.	P	D	V	K	F	E	H	A	T	G	Y	K	T	A	.	.	.	.	.	.	.	.	D	N	M	S	A	Y	N	A	R	F	Y	E	G	R	Y	V	Q	G	V	I	A	A	K	M	S	K	K	G	.	.	I	A	G	Y	I	G	S	V	P	V	P	E	V	V	Q	G	I	N	S	F	M	L	G	A	Q	S
Template Known Secondary structure			.	T	T	S						S					B	.	.	.	.	.	.	.	.	T	T																								S	S		.	.																										T
Template Predicted Secondary structure			.															.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		102		.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	.	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A	G
Query Conservation																	.
Alig confidence																	.																.	.													.	.													.	.	.	.								.	.	.
Template Conservation																																	.	.													.	.													.	.	.	.								.	.	.
Template Sequence		V	N	P	D	F	R	V	K	V	I	W	V	N	S	W	F	D	P	G	K	E	A	D	A	A	K	A	L	I	D	Q	.	.	G	V	D	I	I	T	Q	H	T	D	S	T	.	.	A	A	I	Q	V	A	H	D	R	G	I	K	.	.	.	.	A	F	G	Q	A	S	D	.	.	.	M	I	K	F	A	P	D
Template Known Secondary structure		T		T	T									S	S	S																T	.	.	T		S					S	S	S	S	S	.	.									T	T			.	.	.	.						S		.	.	.		G	G	G	S	T	T
Template Predicted Secondary structure																																	.	.													.	.													.	.	.	.								.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.				.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	L	T	A	V	V	D	E	W	G	P	Y	Y	I	D	R	A	K	A	V	L	D
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions