Job Description P39265 Confidence 96.06% Date Thu Jan 5 11:58:38 GMT 2012 Rank 101 Aligned Residues 197 % Identity 7% Template c3p3wC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution Resolution 4.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																										.																	.
Query SS confidence																										.																	.
Query Sequence		E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	.	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	.	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A
Query Conservation																										.																	.
Alig confidence																										.																	.																							.
Template Conservation																																																																		.
Template Sequence		S	I	G	G	L	F	M	R	N	T	V	Q	E	H	S	A	F	R	F	A	V	Q	L	Y	N	T	N	Q	N	P	F	H	L	N	Y	H	V	D	H	L	D	S	S	N	S	F	S	V	T	N	A	F	C	S	Q	F	S	R	G	V	Y	A	I	F	.	G	F	Y	D	Q	M	S	M	N	T	L	T	S	F	C
Template Known Secondary structure									S	S																	S																S	S															T	T		S				.					T	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K
Query Conservation
Alig confidence															.	.	.	.	.	.																											.	.	.	.	.	.																		.	.	.
Template Conservation															.	.	.	.	.	.																											.	.	.	.	.	.																		.	.	.
Template Sequence		G	A	L	H	T	S	F	V	T	P	S	F	P	.	.	.	.	.	.	T	D	A	D	V	Q	F	V	I	Q	M	R	P	A	L	K	G	A	I	L	S	L	L	S	Y	Y	.	.	.	.	.	.	K	W	E	K	F	V	Y	L	Y	D	T	E	R	G	F	S	V	.	.	.	L	Q	A	I	M	E	A	A	V
Template Known Secondary structure				T	T						S	S			.	.	.	.	.	.		S	S			S	S					S														T	.	.	.	.	.	.	T										S	S	S		S			.	.	.									T
Template Predicted Secondary structure															.	.	.	.	.	.																											.	.	.	.	.	.																		.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		Q	N	N	W	Q	V	T	A	R	S	V	G	N	I	K	D	V	Q	E	F	R	R	I	I	E	E	M	D	R	R	Q	E	K	R	.	Y	L	I	D	C	E	V	E	R	I	N	T	I	L	E	Q	V	K	H	S	R
Template Known Secondary structure		T	T	T									S	S			S	T	T										T	T	T	T				.																T					T
Template Predicted Secondary structure																																				.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions