Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 41 Aligned Residues 268 % Identity 16% Template c3o74A_ PDB info PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida Resolution 2.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R
Query Conservation
Alig confidence																																								.	.																																		.
Template Conservation																																								.	.																																		.
Template Sequence		H	T	R	T	L	G	F	I	L	P	D	L	E	N	P	S	Y	A	R	I	A	K	Q	L	E	Q	G	A	R	A	R	G	Y	Q	L	L	I	A	.	.	S	S	D	D	Q	P	D	S	E	R	Q	L	Q	Q	L	F	R	A	R	R	C	D	A	L	F	V	A	S	C	L	P	P	E	.	D	D	S	Y	R	E
Template Known Secondary structure											S		T	T																		T	T							.	.			T	T															T	T		S										S	S	.
Template Predicted Secondary structure																																								.	.																																		.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		L	Q	D	K	G	L	P	V	I	A	I	D	R	R	L	D	P	.	.	.	.	.	.	.	.	A	H	F	C	S	V	I	S	D	D	R	D	A	S	R	Q	L	A	A	S	L	L	S	.	.	.	S	A	P	R	S	I	A	L	I	G	A	R	P	E	L	S	V	S	Q	A	R	A	G	G	F	D	E	A	L
Template Known Secondary structure					T	T							S	S				T	.	.	.	.	.	.	.	.	T	T																					T	.	.	.	T			S									T	T	S														T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		Q	G	Y	T	G	E	V	R	R	Y	Q	G	E	A	F	S	R	E	C	G	Q	R	L	X	Q	Q	L	I	D	D	L	G	G	L	P	D	A	L	V	T	T	S	Y	V	L	L	Q	G	V	F	D	T	L	Q	A	R	P	V	D	S	R	Q	L	Q	L	G	T	F	G	D	N	Q	L	L	D	F	L	P	L	P
Template Known Secondary structure		T	T			S								S	S	S	S																T	S			S					S	S													T	S		G	G	G									S			G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	N	A	X	A	Q	Q	H	G	Q	I	A	A	T	A	L	E	L	A	L	A	A	I	E	E	K	R	Y	E	P	G	V	H	A	V	G	R	T	F	K	Q	R	I
Template Known Secondary structure		.	.	.
Template Predicted Secondary structure		.	.	.
Template SS confidence
					286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions