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Job DescriptionP39265
Confidence100.00%DateThu Jan 5 11:58:38 GMT 2012
Rank8Aligned Residues279
% Identity14%Templatec3o1hB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA
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Template Sequence  DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW
Template Known Secondary structure 

S


STT

SSTT
TT
S

SSTTTTTTTT
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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  WKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFK
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Template Sequence  VGNTPVFATVNQLDLD. . . EEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIAL. . LLGPRTKPVTTGFYEAIK
Template Known Secondary structure  TT


SS




...TTTTTS


TS
TTS

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S
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   110.........120..... ....130.........140.........150.........160...... ...170.........180....
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ
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Template Sequence  N. SDIHIVDSFWADNDKELQRNLVQRVI. DMGNIDYIVG. SAVAIEAAISELRSADKTHDIGLVSVYLSHGVYRGLLRNK
Template Known Secondary structure  S.SS

S
.T


S.
TS
TTTSSS

TTTTS
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   189 190.........200.........210..... ....220..... ....230.........240.........250.........260.....
 
   264.....270.........280.........290.........300.........310.
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Query Sequence  MTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ
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Template Sequence  VLFAPTDKMVQQGRLSVMQAAHYLRHQPY. EKQASPIIKPLTPKTLHD
Template Known Secondary structure 

B

TT


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T




GGG

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   266...270.........280.........290.... .....300.........310..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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