Job Description P39265 Confidence 99.97% Date Thu Jan 5 11:58:38 GMT 2012 Rank 64 Aligned Residues 277 % Identity 17% Template c3kjxD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Resolution 2.33 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	S	A	F	A	A	A	E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V
Query Conservation
Alig confidence																																													.	.																																	.	.
Template Conservation																																													.	.																																	.	.
Template Sequence		A	L	A	S	N	R	V	N	L	V	A	V	I	I	P	S	L	S	N	X	V	F	P	E	V	L	T	G	I	N	Q	V	L	E	D	T	E	L	Q	P	V	V	G	.	.	V	T	D	Y	L	P	E	K	E	E	K	V	L	Y	E	X	L	S	W	R	P	S	G	V	I	I	A	G	L	E	H	S	.	.	E
Template Known Secondary structure			T	T	S	S			S							S		S	S	S	S	S													T	T	S	S							.	.			T	T														T	T			S							S				.	.	S
Template Predicted Secondary structure																																													.	.																																	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	V	A	R	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.																																.	.
Template Conservation																					.	.	.	.	.	.	.	.																																.	.
Template Sequence		A	A	R	A	X	L	D	A	A	G	I	P	V	V	E	I	X	D	S	.	.	.	.	.	.	.	.	D	G	K	P	V	D	A	X	V	G	I	S	H	R	R	A	G	R	E	X	A	Q	A	I	L	K	A	G	Y	R	R	.	.	I	G	F	X	G	T	K	X	P	L	D	Y	R	A	R	K	R	F	E	G
Template Known Secondary structure									T		S	S									.	.	.	.	.	.	.	.	S	S			S	S																					T	T			S	.	.						S	S	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.									.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure											.																																																						.	.
Query SS confidence											.																																																						.	.
Query Sequence		A	T	E	A	F	K	K	A	S	.	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E
Query Conservation											.																																																						.	.
Alig confidence											.																																																						.	.
Template Conservation
Template Sequence		F	T	E	V	L	G	K	N	G	V	E	I	E	D	R	E	F	Y	S	G	G	S	A	L	A	K	G	R	E	X	T	Q	A	X	L	E	R	S	P	D	L	D	F	L	Y	Y	S	N	D	X	I	A	A	G	G	L	L	Y	L	L	E	Q	G	I	D	I	P	G	Q	I	G	L	A	G	F	N	N	V	E	L
Template Known Secondary structure									T	T				S							S																			T	T							S	S														T	T			T	T	T	T						S	B			G	G
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	R	K	M	V	E	A	G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	.	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L	V	T	Q
Query Conservation																																									.
Alig confidence									.	.	.																														.
Template Conservation									.	.	.
Template Sequence		L	Q	G	L	P	R	K	.	.	.	L	A	T	X	D	A	C	R	L	E	I	G	R	K	A	A	E	I	I	A	K	R	L	E	D	P	E	A	E	I	E	T	R	I	T	L	E	P	K	I	S	Y	G	D	T	L	K	R
Template Known Secondary structure		G	G	G	S	S	S		.	.	.		B			B																					G	G	G																S	S	S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		286	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions