Job Description P39265 Confidence 85.06% Date Thu Jan 5 11:58:38 GMT 2012 Rank 136 Aligned Residues 179 % Identity 9% Template c3jpyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b Resolution 3.21 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																				.														.
Query SS confidence																																				.														.
Query Sequence		S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	.	P	L	S	S	V	N	L	V	M	P	V	A	R	.	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V
Query Conservation																																				.														.
Alig confidence																																				.														.
Template Conservation
Template Sequence		R	V	E	L	V	A	M	N	E	T	D	P	K	S	I	I	T	R	I	C	D	L	M	S	D	R	K	I	Q	G	V	V	F	A	D	D	T	D	Q	E	A	I	A	Q	I	L	D	F	I	S	A	Q	T	L	T	P	I	L	G	I	H	G	G	S	S	M	I	M	A	D	K	D	E	S	S	M	F	F	Q	F
Template Known Secondary structure									S			S															S			S								S			T													T	T								S	G	G	G	S				S			T	T						S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R
Query Conservation
Alig confidence																			.	.	.											.	.																																						.	.	.	.
Template Conservation																			.	.	.											.	.																																						.	.	.	.
Template Sequence		G	P	S	I	E	Q	Q	A	S	V	M	L	N	I	M	E	E	.	.	.	Y	D	W	Y	I	F	S	I	V	T	.	.	T	Y	F	P	G	Y	Q	D	F	V	N	K	I	R	S	T	I	E	N	S	F	V	G	W	E	L	E	E	V	L	L	L	D	M	S	S	K	.	.	.	.	I	Q	N	Q	L	K	K
Template Known Secondary structure		S																	.	.	.	T	T									.	.		S	S	T	T														T		S	S															T	.	.	.	.						T	T
Template Predicted Secondary structure																			.	.	.											.	.																																						.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	S	P	I	I	L	L	Y	C	T	K	E	E	A	T	Y	I	F	E	V	A	N	S	V	G	L	T	G	Y
Template Known Secondary structure					S						S														T	T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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