Return to main results Retrieve Phyre Job Id

Job DescriptionP39265
Confidence98.59%DateThu Jan 5 11:58:38 GMT 2012
Rank81Aligned Residues211
% Identity13%Templatec3hutA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum
Resolution1.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30...... ...40.........50.. .......60.........70.........80.........90......
Predicted Secondary structure 




.........

















Query SS confidence 










. .















. . . . . . .











































Query Sequence  EYAVVLKTLSN. . PFWVDMKKGIEDEAKT. . . . . . . LGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNL
Query Conservation   



      .. 
      

   
  ....... 
    
       
       
  
     
 

         
Alig confidence 










..















.......











































Template Conservation   

   
 

     
     
  

    
  


 
  
 
   
       
      

    
  


   
   
Template Sequence  LLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVS
Template Known Secondary structure 
SSSTTTTTBTTB

TT

TT
SS
Template Predicted Secondary structure 
























Template SS confidence 















































































   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  VMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRN
Query Conservation             
                        
  
                      
              
  
Alig confidence 


























...

































.....










Template Conservation             

 
            ...                               

 .....           
Template Sequence  XAAGSIYGKEGXPQLSPTAAHPDYIKI. . . SPWQFRAITTPAFEGPNNAAWXIGDGFTSVAVIG. . . . . VTTDWGLSSAQ
Template Known Secondary structure  T

SS


GGGTTS...
TTSS

GGGTT

.....SS
Template Predicted Secondary structure 













...








.....

Template SS confidence 















































































   122.......130.........140........ .150.........160.........170.........180.. .......190...
 
   177..180.........190.........200.........210.........220.........230.........240......
Predicted Secondary structure 



























Query SS confidence 





































































Query Sequence  GATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLV
Query Conservation 
                                         

    
  
 
   

   
 
 

 
Alig confidence 
























..










































Template Conservation                          
..       
       
                   
       
Template Sequence  AFRKAFELRGGAVVVNEEVPPGNRR. . FDDVIDEIEDEAPQAIYLAXAYEDAAPFLRALRARGSALPVYG
Template Known Secondary structure  TT

TT


..


SS
TT



Template Predicted Secondary structure 










..










Template SS confidence 





































































   194.....200.........210........ .220.........230.........240.........250.........260.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions