Job Description P39265 Confidence 98.58% Date Thu Jan 5 11:58:38 GMT 2012 Rank 82 Aligned Residues 240 % Identity 9% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																	.	.	.	.	.	.	.																.
Query SS confidence																				.	.																	.	.	.	.	.	.	.																.
Query Sequence		T	S	A	F	A	A	A	E	Y	A	V	V	L	K	T	L	S	N	.	.	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	.	.	.	.	.	.	.	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	.	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F
Query Conservation																				.	.																	.	.	.	.	.	.	.																.
Alig confidence																				.	.																	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		A	Q	S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I
Template Known Secondary structure					S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160
Predicted Secondary structure																																				.	.	.																															.	.	.	.	.
Query SS confidence																																				.	.	.																															.	.	.	.	.
Query Sequence		A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	.	.	.	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	.	.	.	.	.	G	A	E	G	G	E	V	A
Query Conservation																																				.	.	.																															.	.	.	.	.
Alig confidence																																				.	.	.																															.	.	.	.	.
Template Conservation
Template Sequence		A	G	Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A
Template Known Secondary structure			S			S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K
Query Conservation
Alig confidence					.	.																						.
Template Conservation					.	.																						.
Template Sequence		I	I	T	.	.	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	.	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T
Template Known Secondary structure					.	.		S	S														G	G	G	G	T	.											S	S		S												S			S																				T	T	S
Template Predicted Secondary structure					.	.																						.
Template SS confidence
		197	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	L	V	Y	L	Q	Y	G	A	S	L	A	A	F	R	D	I	A	G	D
Template Known Secondary structure		S							S	G	G	G	S								G	G
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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