Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 31 Aligned Residues 262 % Identity 18% Template c3e3mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K
Query Conservation
Alig confidence																																					.	.																																	.	.
Template Conservation																																					.	.																																	.	.
Template Sequence		F	V	G	L	L	L	P	S	L	N	N	L	H	F	A	Q	T	A	Q	S	L	T	D	V	L	E	Q	G	G	L	Q	L	L	L	G	.	.	Y	T	A	Y	S	P	E	R	E	E	Q	L	V	E	T	M	L	R	R	R	P	E	A	M	V	L	S	Y	D	G	H	T	.	.	E	Q	T	I	R	L	L	Q	R
Template Known Secondary structure								S		S	S																		T	T							.	.			T	T															T			S							S				.	.
Template Predicted Secondary structure																																					.	.																																	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																.	.
Template Conservation													.	.	.	.	.	.	.	.																																.	.
Template Sequence		A	S	I	P	I	V	E	I	W	E	K	.	.	.	.	.	.	.	.	P	A	H	P	I	G	H	T	V	G	F	S	N	E	R	A	A	Y	D	M	T	N	A	L	L	A	R	G	F	R	K	.	.	I	V	F	L	G	E	K	D	D	D	W	T	R	G	A	A	R	R	A	G	F	K	R	A	M	R	E	A
Template Known Secondary structure				S						S	S		.	.	.	.	.	.	.	.		S	S		S	S																					T	T			S	.	.							S	S		T	T	S																T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
				186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.	.																																																							.	.
Query SS confidence		.	.																																																							.	.
Query Sequence		.	.	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A
Query Conservation		.	.																																																							.	.
Alig confidence		.	.																																																							.	.
Template Conservation
Template Sequence		G	L	N	P	D	Q	E	I	R	L	G	A	P	P	L	S	I	E	D	G	V	A	A	A	E	L	I	L	Q	E	Y	P	D	T	D	C	I	F	C	V	S	D	M	P	A	F	G	L	L	S	R	L	K	S	I	G	V	A	V	P	E	Q	V	S	V	V	G	F	G	N	F	E	V	S	R	F	A	S	P	E
Template Known Secondary structure		T	S		S							S		S	S																		T	T							S	S															T			T	T	T	T						S	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L	V
Query Conservation
Alig confidence		.	.	.																											.	.	.	.	.
Template Conservation		.	.	.																											.	.	.	.	.
Template Sequence		.	.	.	I	S	T	V	R	V	D	P	I	A	I	G	R	E	T	G	S	L	I	L	R	L	L	D	A	Q	.	.	.	.	.	H	I	T	L	P	P	V	L	E	F	R	P	S	L
Template Known Secondary structure		.	.	.		B																					T				.	.	.	.	.												T	T	S
Template Predicted Secondary structure		.	.	.																											.	.	.	.	.
Template SS confidence
					296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions