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Job DescriptionP39265
Confidence100.00%DateThu Jan 5 11:58:38 GMT 2012
Rank34Aligned Residues262
% Identity23%Templatec3c3kA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes
Resolution1.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
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Query Sequence  AAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVAR
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Template Sequence  KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC. . NTESDLARSRSCLTLLSGKMVDGVITMDALS. . . ELPELQ
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S
TTSTT
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TT
TTT

S


GG...G
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   7..10.........20.........30.........40.... .....50.........60.........70..... ....80.
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAF
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Template Sequence  NIIGAFPWVQCAEY. . . . . . . . DPLSTVSSVSIDDVAASEYVVDQLVK. . . SGKKRIALINHDLAYQYAQHRESGYLNRL
Template Known Secondary structure  TTSSSS
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TTSSS


...TT




TTS
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   82.......90..... ....100.........110.........120. ........130.........140.........150
 
   183......190.........200.........210.........220.........230......... 240.........250.........260
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Query Sequence  KKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAG. . KTGKVLVVGTDGIPEARKMVE
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Template Sequence  KFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGVDISQITVP
Template Known Secondary structure  T




SSSSSSSS

SSSTT

TTTT

SB

GGGGTSSS
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   151........160.........170.........180.........190.........200.........210.........220.........230
 
   261........270.........280.........290.........300.......
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Query Sequence  AGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSI
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Template Sequence  A. . . LTTVQQPSEQIGMKAVSLLLEQIHSDV. . . . HHLLPWKFVRRQ
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B

T


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T
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   231 ........240.........250........ .260.........270
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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