Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 12 Aligned Residues 269 % Identity 22% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

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		24	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		A	A	E	Y	A	V	V	.	.	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		Q	Y	Y	M	I	C	I	P	K	V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A	D	Y	E	K	T	Y	D	A	A	K
Template Known Secondary structure										S				S	S	S																		T									S	S	T	T															T			S							S		T	T	T	T					T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																													.
Template Conservation																					.	.	.	.	.	.	.																													.
Template Sequence		E	I	K	D	A	G	I	K	L	I	V	I	D	S	G	M	K	Q	D	.	.	.	.	.	.	.	I	A	D	I	T	V	A	T	D	N	I	Q	A	G	I	R	I	G	A	V	T	K	N	L	V	R	K	S	.	G	K	I	G	V	I	S	F	V	K	N	S	K	T	A	M	D	R	E	E	G	L	K	I	G
Template Known Secondary structure		T	T	G	G	G	T							S	S			S	S		.	.	.	.	.	.	.			S																						T	S	S	S	.								S		T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.																													.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A
Query Conservation
Alig confidence						.																																																																				.	.	.	.	.
Template Conservation						.																																																																				.	.	.	.	.
Template Sequence		L	S	D	D	.	S	N	K	I	E	A	I	Y	Y	C	D	S	N	Y	D	K	A	Y	D	G	T	V	E	L	L	T	K	Y	P	D	I	S	V	M	V	G	L	N	Q	Y	S	A	T	G	A	A	R	A	I	K	D	M	S	L	E	A	K	V	K	L	V	C	I	D	S	S	M	.	.	.	.	.	E	Q	E
Template Known Secondary structure			G	G	G	.	G	G	G								T	T																	T	T							S	S														T	T		T	T	T	S							S		S	.	.	.	.	.
Template Predicted Secondary structure						.																																																																				.	.	.	.	.
Template SS confidence
		157	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		G	I	F	E	A	M	V	V	Q	K	P	F	N	I	G	Y	L	G	V	E	K	A	L	K	L	L	K	K	E	Y	V	.	P	K	Q	L	D	S	G	C	A	L	I	T	K	D
Template Known Secondary structure			S																										T				.		S
Template Predicted Secondary structure																																	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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