Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 48 Aligned Residues 266 % Identity 18% Template c3bblA_ PDB info PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans Resolution 2.35 Å

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		24	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		A	A	E	Y	A	V	V	L	K	.	.	.	.	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																													.	.																																	.	.
Template Conservation																																											.	.																																	.	.
Template Sequence		S	F	X	I	G	Y	S	W	T	Q	T	E	P	G	Q	V	N	H	I	L	D	Q	F	L	S	S	X	V	R	E	A	G	A	V	N	Y	F	V	L	P	F	.	.	P	F	S	E	D	R	S	Q	I	D	I	Y	R	D	L	I	R	S	G	N	V	D	G	F	V	L	S	S	I	N	Y	N	.	.	D	P	R
Template Known Secondary structure														T	T		S			T															T	T							.	.				S	S	T	T											T	T			S						S			T	T	.	.
Template Predicted Secondary structure																																											.	.																																	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		V	Q	F	L	L	K	Q	K	F	P	F	V	A	F	G	R	S	N	P	D	W	D	.	.	.	.	.	.	.	.	F	A	W	V	D	I	D	G	T	A	G	T	R	Q	A	V	E	Y	L	I	G	R	G	H	R	R	.	.	.	I	A	I	L	A	W	P	E	D	S	R	V	G	N	D	R	L	Q	G	Y	L
Template Known Secondary structure								T	T							S			S	T	T			.	.	.	.	.	.	.	.																							T				.	.	.								T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160									.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure													.	.	.																																																		.	.
Query SS confidence													.	.	.																																																		.	.
Query Sequence		E	A	F	K	K	A	S	Q	I	K	L	.	.	.	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E
Query Conservation													.	.	.																																																		.	.
Alig confidence													.	.	.																																																		.	.
Template Conservation
Template Sequence		E	A	X	Q	T	A	Q	L	P	I	E	T	G	Y	I	L	R	G	E	G	T	F	E	V	G	R	A	X	T	L	H	L	L	D	L	S	P	E	R	R	P	T	A	I	X	T	L	N	D	T	X	A	I	G	A	X	A	A	A	R	E	R	G	L	T	I	G	T	D	L	A	I	I	G	F	D	D	A	P	X
Template Known Secondary structure							T	T					G	G	G						S	S													T	S		T	T	T	S		S					S	S														T	T			B	T	T	T	B						S			T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	K	M	V	E	A	G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		V	Q	Y	L	F	P	P	.	.	.	L	S	S	V	R	Q	P	I	A	E	A	G	R	K	C	I	E	L	L	V	A	I	V	E	G	R	E	P	E	Q	K	H	I	L	L	Q	P	S	L	I	I	R	A
Template Known Secondary structure		G	G	G	S	S	S		.	.	.																								T	T				S													B
Template Predicted Secondary structure									.	.	.
Template SS confidence
		288	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions