Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 30 Aligned Residues 268 % Identity 16% Template c2rgyA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum Resolution 2.05 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	.	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K
Query Conservation																																				.
Alig confidence																																				.																																			.	.
Template Conservation																																																																							.	.
Template Sequence		I	G	L	F	V	P	T	F	F	G	S	Y	Y	G	T	I	L	K	Q	T	D	L	E	L	R	A	V	H	R	H	V	V	V	A	T	G	C	G	E	S	T	P	R	E	Q	A	L	E	A	V	R	F	L	I	G	R	D	C	D	G	V	V	V	I	S	H	D	L	H	.	.	D	E	D	L	D	E	L	H	R
Template Known Secondary structure							S		S		S																	T	T										S	S	S																T	T		S							S	S	S		.	.
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		X	H	P	K	X	V	F	L	N	R	A	F	D	A	.	.	.	.	.	.	.	.	L	P	D	A	S	F	C	P	D	H	R	R	G	G	E	L	A	A	A	T	L	I	E	.	.	.	H	G	H	R	K	L	A	V	I	S	G	P	F	T	A	S	D	N	V	E	R	L	D	G	F	F	D	E	L	A	R	H
Template Known Secondary structure				S	S					S	S			T	T	.	.	.	.	.	.	.	.	S	G	G	G																				.	.	.	T	T			S						S		T	T																	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		186		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure			.																																																						.	.
Query SS confidence			.																																																						.	.
Query Sequence		S	.	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	.	.	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A	G
Query Conservation			.																																																						.	.
Alig confidence			.																																																						.	.																							.
Template Conservation																																																																																	.
Template Sequence		G	I	A	R	D	S	V	P	L	I	E	S	D	F	S	P	E	G	G	Y	A	A	T	C	Q	L	L	E	S	K	A	P	F	T	G	L	F	C	A	N	D	T	X	A	V	S	A	L	A	R	F	Q	Q	L	G	I	S	V	P	G	D	V	S	V	I	G	Y	D	D	D	Y	S	A	A	Y	A	A	P	A	.
Template Known Secondary structure		T			G	G	G	S							S	S															T				S					S	S														T	T			T	T	T	T										T	T	S	T	T	S	S	S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L	V	T	Q
Query Conservation
Alig confidence		.	.																													.
Template Conservation		.	.																													.
Template Sequence		.	.	L	T	S	V	H	I	P	T	A	E	L	T	Q	N	A	V	R	W	L	I	N	Q	C	Y	G	T	K	W	.	E	I	F	R	E	F	P	V	T	V	S	X	R	A	S	V	A	R
Template Known Secondary structure		.	.																													.														S	S
Template Predicted Secondary structure		.	.																													.
Template SS confidence
				314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions