Job Description P39265 Confidence 100.00% Date Thu Jan 5 11:58:38 GMT 2012 Rank 20 Aligned Residues 273 % Identity 36% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		K	T	I	G	L	V	I	S	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	Y	K	I	I	V	E	.	.	D	S	Q	N	D	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V	V	T	A	I	K	E	A	N
Template Known Secondary structure									S		S	S	S																		T							.	.			T	T															T	T		S							S	S	T	T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																													.
Template Conservation																		.	.	.	.	.	.	.																													.
Template Sequence		S	K	N	I	P	V	I	T	I	D	R	S	A	N	G	G	.	.	.	.	.	.	.	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	.	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D	E	A	I	A	K
Template Known Secondary structure			T	T							S	S			S	S	S	.	.	.	.	.	.	.			S																						T	T	T		.										T	T																T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																													.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A	G	Q	M
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		Y	P	D	I	K	I	V	A	K	Q	A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	.	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M
Template Known Secondary structure			T	T										T	T																	S								S	S														T	T		.	T	T																			T	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L	V
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		A	A	T	I	A	Q	Q	P	A	L	M	G	S	L	G	V	E	M	A	D	K	Y	L	K	G	E	K	I	.	P	N	F	I	P	A	E	L	K	L	I	T	K	E	N	V
Template Known Secondary structure																									T	T				.		S											T	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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