Job Description P38055 Confidence 99.98% Date Thu Jan 5 11:57:55 GMT 2012 Rank 3 Aligned Residues 412 % Identity 10% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		L	A	R	F	H	Y	R	I	F	G	I	I	S	F	S	L	L	L	T	G	F	L	S	Y	S	G	N	V	V	L	A	K	.	L	V	S	N	G	W	S	N	N	F	L	N	A	A	F	T	S	A	L	M	F	G	Y	F	I	G	S	L	T	G	G	F	I	G	D	Y	F	G	R	R	R	A	F	R	I	N	L
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		M	Y	Y	L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I
Template Known Secondary structure							S																																																					T												T	T		T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	G	I	A	A	T	G	A	A	F	V	P	D	M	Y	W	L	I	F	F	R	F	L	M	G	T	G	M	G	A	L	I	M	V	G	Y	A	S	F	T	E	F	I	P	A	T	V	R	G	K	W	S	A	R	L	S	F	V	G	N	W	S	P	M	L	S	A	A	I	G	V	V	V	I	A	F	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I
Template Known Secondary structure							T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	I	M	F	L	L	G	G	I	G	I	L	L	A	W	F	L	S	G	K	Y	F	I	E	S	P	R	W	L	A	G	K	G	Q	I	A	G	A	E	C	Q	L	R	E	V	E	Q	Q	I	E	R	E	K	S	I	R	L	P	P	L	T	S	Y	Q	S	N	S	K	V	K	V	I	K	G	T	F	W	L	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L
Template Known Secondary structure																											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				S		S	S	S		S	S					S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	G	E	M	L	R	R	T	L	V	A	I	T	V	L	I	A	M	N	I	S	L	Y	T	I	T	V	W	I	P	T	I	F	V	N	S	G	I	D	V	D	K	S	I	L	M	T	A	V	I	M	I	G	A	P	V	G	I	F	I	A	A	L	I	I	D	H	F	P	R	R	L	F	G	S	T	L	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G
Template Known Secondary structure		T	T	S	S																												T	T	S	S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		I	I	A	V	L	G	Y	I	Y	S	I	Q	T	T	E	W	A	I	L	I	Y	G	L	V	M	I	F	F	L	Y	M	Y	V	C	F	A	S	A	V	Y	I	P	E	L	W	P	T	H	L	R	L	R	G	S	G	F	V	N	A	V	G	R	.	I	V	A	V	F	T	P	Y	G	V	A	A	L	L	T	H	Y
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		T	I	M	S	V	R	I	I	G	S	S	F	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I
Template Known Secondary structure													T																																	S		G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.			.	.	.	.	450	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		G	S	I	T	V	F	M	V	L	G	V	M	L	L	L	C	A	L	V	L	S	I	F	G	I	E	T	R	K	V	S	L	.	.	E	E	I	S	E	V
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V	N	E	V
Template Known Secondary structure																									S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.