Return to main results Retrieve Phyre Job Id

Job DescriptionP38055
Confidence17.47%DateThu Jan 5 11:57:55 GMT 2012
Rank7Aligned Residues48
% Identity19%Templatec3qnqD_
PDB info PDB header:membrane protein, transport proteinChain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Resolution3.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   403......410.........420.........430.........440.........450
Predicted Secondary structure 





Query SS confidence 















































Query Sequence  PYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISE
Query Conservation      
 
    
                       



 
 



 
Alig confidence 















































Template Conservation 
        
       
  

  

   

  
 
   
     
  
Template Sequence  PILFSGYLGSGGKISGVILQLVNFALAFVIYLPFLKIWDKQKIAEEKG
Template Known Secondary structure 
TTTT
TTTTT
Template Predicted Secondary structure 



Template SS confidence 















































   385....390.........400.........410.........420.........430..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions