Job Description P38055 Confidence 100.00% Date Thu Jan 5 11:57:55 GMT 2012 Rank 2 Aligned Residues 407 % Identity 11% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	H	Y	R	I	F	G	I	I	S	F	S	L	L	L	T	G	F	L	S	Y	S	G	N	V	V	L	A	K	L	V	S	N	G	W	S	N	N	F	L	N	A	A	F	T	S	A	L	M	F	G	Y	F	I	G	S	L	T	G	G	F	I	G	D	Y	F	G	R	R	R	A	F	R	I	N	L	L	I	V
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	.	.	.	.	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y
Template Known Secondary structure			T	T	T																.	.	.	.														T	T			T	T													T	T											S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		G	I	A	A	T	G	A	A	F	V	.	.	.	P	D	M	Y	W	L	I	F	F	R	F	L	M	G	T	G	M	G	A	L	I	M	V	G	Y	A	S	F	T	E	F	I	P	A	T	V	R	G	K	W	S	A	R	L	S	F	V	G	N	W	S	P	M	L	S	A	A	I	G	V	V	V	I	A	F	F	S
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V
Template Known Secondary structure							T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	I	M	F	L	L	G	G	I	G	I	L	L	A	W	F	L	S	G	K	Y	F	I	E	S	P	R	W	L	A	G	K	G	Q	I	A	G	A	E	C	Q	L	R	E	V	E	Q	Q	I	E	R	E	K	S	I	R	L	P	P	L	T	S	Y	Q	S	N	S	K	V	K	V	I	K	G	T	F	W	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R
Template Known Secondary structure												S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	G	E	M	L	R	R	T	L	V	A	I	T	V	L	I	A	M	N	I	S	L	Y	T	I	T	V	W	I	P	T	I	F	V	N	S	G	I	D	V	D	K	S	I	L	M	T	A	V	I	M	I	G	A	P	V	G	I	F	I	A	A	L	I	I	D	H	F	P	R	R	L	F	G	S	T	L	L	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		W	.	.	.	.	.	.	.	.	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L
Template Known Secondary structure			.	.	.	.	.	.	.	.																											S	T	T																															S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		262									.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	A	V	L	G	Y	I	Y	S	I	Q	T	T	E	W	A	I	L	I	Y	G	L	V	M	I	F	F	L	Y	M	Y	V	C	F	A	S	A	V	Y	I	P	E	L	W	P	T	H	L	R	L	R	G	S	G	F	V	N	A	V	G	R	I	V	A	V	F	T	P	Y	G	V	A	A	L	L	T	H	Y	G
Query Conservation
Alig confidence																.	.																																					.	.
Template Conservation																.	.																																					.	.
Template Sequence		I	A	M	A	L	C	L	I	S	A	F	A	G	G	.	.	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G
Template Known Secondary structure													S			.	.															T	T											S	S		G	G	G					.	.							G	G	G																	T
Template Predicted Secondary structure																.	.																																					.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	T	V	F	M	V	L	G	V	M	L	L	L	C	A	L	V	L	S	I	F	G	I	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure		S	S	G	G	G	G															T	S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.