Return to main results Retrieve Phyre Job Id

Job DescriptionP76268
Confidence89.79%DateWed Jan 25 15:21:07 GMT 2012
Rank279Aligned Residues86
% Identity23%Templated2esha1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain PadR-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40. ........50.........60....... ..70.........80....
Predicted Secondary structure 





.........









......



Query SS confidence 





















. . . . . . . . .

























. . . . . .
















Query Sequence  FGILQALGEEREIGITELSQRV. . . . . . . . . MMSKSTVYRFLQTMKTLGYVAQEGES. . . . . . EKYSLTLKLFELGARAL
Query Conservation 
 

  

      




  
.........

  

  


 

   
 
      ......  
 

     
     
Alig confidence 








.











.........

























......
















Template Conservation    

 

  . 
  



   
             



  
 


  
 
        
  

 
 


 
   
    
Template Sequence  STILLLVAE. KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREIL
Template Known Secondary structure  .S
B
TT

SSTT





TTS
SSSS

Template Predicted Secondary structure 
.

























Template SS confidence 















































































   16...20.... .....30.........40.........50.........60.........70.........80.........90....
 
   85... .90.........100......
Predicted Secondary structure 



.


Query SS confidence 



.

















Query Sequence  QNVD. LIRSADIQMRELSRLTKE
Query Conservation      .
     
 
  
      
Alig confidence 



.

















Template Conservation                  
      
Template Sequence  RSLEDMKRRIETLEERIKRVLQE
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 






















   95....100.........110.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions