Job Description P76268 Confidence 100.00% Date Wed Jan 25 15:21:07 GMT 2012 Rank 1 Aligned Residues 245 % Identity 34% Template c1mkmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr Resolution 2.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	S	S	V	L	K	V	F	G	I	L	Q	A	L	G	E	E	R	.	E	I	G	I	T	E	L	S	Q	R	V	M	M	S	K	S	T	V	Y	R	F	L	Q	T	M	K	T	L	G	Y	V	A	Q	E	G	E	S	E	K	Y	S	L	T	L	K	L	F	E	L	G	A	R	A	L	Q	N	V	D	L	I	R
Query Conservation																				.
Alig confidence																				.																																				.
Template Conservation																																																								.
Template Sequence		M	N	T	L	K	K	A	F	E	I	L	D	F	I	V	K	N	P	G	D	V	S	V	S	E	I	A	E	K	F	N	M	S	V	S	N	A	Y	K	Y	M	V	V	L	E	E	K	G	F	V	L	R	K	K	.	D	K	R	Y	V	P	G	Y	K	L	I	E	Y	G	S	F	V	L	R	R	F	N	I	R	D
Template Known Secondary structure			T	T															S	S		B									T	T																T	T	S					T	.	T	S						T
Template Predicted Secondary structure																																																								.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	D	I	Q	M	R	E	L	S	R	L	T	K	E	T	I	H	L	G	A	L	D	E	D	S	I	V	Y	I	H	K	I	D	S	M	Y	N	L	R	M	Y	S	R	I	G	R	R	N	P	L	Y	S	T	A	I	G	K	V	L	L	A	W	R	D	R	D	E	V	K	Q	I	L	E	G	V	E	Y	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	H	D	H	L	V	D	I	M	K	R	T	G	E	T	V	H	L	I	L	K	D	G	F	E	G	V	Y	I	D	K	V	E	G	E	Q	S	I	P	M	V	S	R	L	G	M	K	V	D	L	Y	S	T	A	S	G	K	S	I	L	A	F	V	P	E	K	E	L	K	E	Y	L	K	I	V	E	L	K	P
Template Known Secondary structure													T	T		S									S	S											T	T	S				S			S	S					S	S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	E	R	T	I	T	S	T	E	A	L	L	P	V	L	D	Q	V	R	E	Q	G	Y	G	E	D	N	E	E	Q	E	E	G	L	R	C	I	A	V	P	V	F	D	R	F	G	V	V	I	A	G	L	S	I	S	F	P	T	L	R	F	S	E	E	R	L	Q	E	Y	V	A	M	L	H	T	A	A	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	P	N	T	I	T	N	P	R	V	L	K	R	E	L	E	K	I	R	K	R	G	Y	A	V	D	N	E	E	N	E	I	G	I	M	C	V	G	V	P	I	F	D	H	N	G	Y	P	V	A	G	V	S	I	S	G	V	A	R	K	F	T	E	E	K	I	E	E	Y	S	D	V	L	K	E	K	A	E	E
Template Known Secondary structure		S	S	T	T																			S	S					S	S	S	S	T	T											T	T	S												G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	Q	M	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	R	K	L	G	Y
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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