 |
Job Description | P0AEI4 | Confidence | 78.38% | Date | Thu Jan 5 11:23:25 GMT 2012 |
Rank | 55 | Aligned Residues | 109 |
% Identity | 12% | Template | d7reqb2 |
SCOP info | Flavodoxin-like
| Cobalamin (vitamin B12)-binding domain
| Cobalamin (vitamin B12)-binding domain
|
Resolution | 2.20 |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|
|  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | P | Q | P | K | I | G | F | V | S | L | G | C | P | K | N | L | V | D | S | E | R | . |
. |
. |
. |
I | L | T | E | L | R | T | E | G | Y | D | V | V | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | Y | D | D | A | D | M | V | I | V | N | T | C | G | F | I | D | S | A | V | Q | E | S | L | E | A |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |
|   |
|
|   |   |
|   |   |
|
|   |   | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|   |
|
|
|
|   |
|
| . | . | . |   |
|
|   |   |   |
|
|
|   |
|
|   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|   |   |   |
|
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |
|   |
|   |   |   |
|   |
Template Sequence |   |
V | S | E | R | P | K | V | F | L | A | C | L | G | . |
. |
. |
T | R | R | D | F | G | G | R | E | G | F | S | S | P | V | W | H | I | A | G | I | D | T | P | Q | V | E | G | G | T | T | A | E | I | V | E | A | F | K | K | S | G | A | Q | V | A | D | L | C | S | S | A | K | V | Y | A | Q | Q | G | L | E | V | A | K |
Template Known Secondary structure |   |
S | S | S |
|
| B |
|  |  |  |  |
| S | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| B |
|
|  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |
|
| . | . | . |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
507 | . | . | 510 | . | . | . | . | . | . | . | . | . | |
|
|
520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . |
  |
  |   |
67 | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | G | E | A | L | N | E | N | G | K | V | I | V | T | G | C | L | G | A | K | E | D | Q | I | R | E | V | H | P | K | V | L | E | I | T | . |
. |
G | P | H | S | Y | E | Q | V | L | E | H | V | H | H | Y |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
| . | . |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
| . |
|
|
|   |
|
|   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
A | L | K | A | A | G | A | K | A | L | Y | L | S | G | A | F | K | E | F | G | D | D | A | A | E | A | E | K | . |
L | I | D | G | R | L | F | M | G | M | D | V | V | D | T | L | S | S | T | L | D | I | L |
Template Known Secondary structure |   |
 |  |  |  | T | T |
| S |  |  |  |  |  | S |
| G | G | G | G | G | G | G |  |  |  |  |  |  | . |  |
|
|  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
584 | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | |
. | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|