 |
Job Description | P0AEI4 | Confidence | 30.05% | Date | Thu Jan 5 11:23:25 GMT 2012 |
Rank | 218 | Aligned Residues | 144 |
% Identity | 16% | Template | c3lu2B_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:lmo2462 protein; |
PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase
|
Resolution | 2.20 Å |
|
 |
  |   |
175 | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | E | A | K | R | L | V | D | A | G | V | K | E | I | L | V | I | S | Q | D | T | S | A | Y | G | V | D | V | K | H | R | T | G | F | H | N | G | E | P | V | K | T | S | M | V | S | L | C | E | Q | L | S | K | L | G | I | W | T | R | L | H | Y | V | Y | P | Y | P | H | V | D | D | V | I | P | L | M | A | E | G |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |   |
|   |
|
|
|   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
Template Conservation |   |
|   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|
|   |
|   |   |
|   |   |
|   | . | . | . | . |
|   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|   |   |   |   | . |   |
|
|   |   |   |
|   | . |
|
Template Sequence |   |
L | D | K | L | T | Q | L | L | D | G | G | V | L | S | V | G | L | T | W | N | N | A | N | L | A | A | D | . |
. |
. |
. |
G | I | X | E | E | R | G | A | G | L | T | R | F | G | K | D | I | I | H | L | L | N | E | R | K | V | F | T | D | V | S | H | L | S | V | K | A | F | . |
W | E | T | L | E | Q | A | E | . |
F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  | S |
| S | S | S |
|
| S | S | B |
| . | . | . | . | B | T | T |
| T | T |
|
|
| B |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
| T | T | B |
|  |  |  |  | . |  |  |  |  |  |  |
| S | . | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |
|
| . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | |
|
|
|
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
. | 180 | . | . | . | . | . | . | |
. |
  |
  |   |
255 | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | |
. | . | . | 330 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
K | I | L | P | Y | L | D | I | P | L | Q | H | A | S | P | R | I | L | K | L | M | K | R | P | G | S | V | D | R | Q | L | A | R | I | K | Q | W | R | E | I | C | P | E | L | T | L | R | S | T | F | I | V | G | F | P | G | E | T | E | E | D | F | Q | M | L | L | D | F | L | K | E | A | . |
R | L | D | R | V | G | C |
Query Conservation |   |
|
|   |   |   |
|   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|   |
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|
|   |
|
|
|
|   |
|
|   |   |   |
|
|   |   |
|   |   |
| . |   |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
| . | . | . | . | . | . | . |
|
|
|   |
|
|
|   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|   |   |
|
|
|
| . | . |
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |
|
|
|
|
|
Template Sequence |   |
V | I | A | S | . |
. |
. |
. |
. |
. |
. |
H | S | S | A | K | A | I | C | A | H | P | R | N | L | D | D | E | Q | I | K | A | X | I | E | H | D | A | X | I | . |
. |
H | V | I | F | H | P | L | F | T | T | N | D | G | V | A | D | I | E | D | V | I | R | H | I | D | H | I | C | E | L | G | G | X | K | N | I | G | F |
Template Known Secondary structure |   |
 |  |  | S | . | . | . | . | . | . | . | S |
|
| B | T | T | T | S |
|
| T | T | S | B |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  | . | . |  |  |
|
|
|  |  |  |  |
| T | T | S |
|
| B |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  | . | . | . | . | . | . | . |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | |
|
. | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|